Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    31   0.66 
AL032630-7|CAA21563.1|  241|Caenorhabditis elegans Hypothetical ...    29   2.7  
AY204183-1|AAO39187.1|  406|Caenorhabditis elegans nuclear recep...    28   4.7  
AL132948-14|CAD91709.1|  399|Caenorhabditis elegans Hypothetical...    28   4.7  
Z70755-4|CAA94783.2|  239|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U80840-11|AAB37935.3|  392|Caenorhabditis elegans Hypothetical p...    27   6.2  

>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 286 RSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRP 185
           R  + +Q   QGQ+  GP+ P GQ  + RQL  P
Sbjct: 760 RMAMFQQQQAQGQQPGGPQQPMGQWPQQRQLPVP 793


>AL032630-7|CAA21563.1|  241|Caenorhabditis elegans Hypothetical
           protein Y62H9A.7 protein.
          Length = 241

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 295 CLSDNLNKMFLTD*YKKKKKNSRGGPVPNSPYXESYYN 408
           CL++ LN   + + Y+K++ N R  P+P   + +++YN
Sbjct: 180 CLTEVLN---ILEQYEKQRNNLRSTPLPTCHHVDTWYN 214


>AY204183-1|AAO39187.1|  406|Caenorhabditis elegans nuclear receptor
           NHR-95 protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 247 RDRGPKLPKGQMERHRQLKRPPVRHKRQGQQRMQLIRC 134
           +D G     G++ +  Q+      + R+G++RMQLIRC
Sbjct: 349 KDLGMLRYAGRLAKMMQVNNSIQENIRKGRERMQLIRC 386


>AL132948-14|CAD91709.1|  399|Caenorhabditis elegans Hypothetical
           protein Y39B6A.17b protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 247 RDRGPKLPKGQMERHRQLKRPPVRHKRQGQQRMQLIRC 134
           +D G     G++ +  Q+      + R+G++RMQLIRC
Sbjct: 342 KDLGMLRYAGRLAKMMQVNNSIQENIRKGRERMQLIRC 379


>Z70755-4|CAA94783.2|  239|Caenorhabditis elegans Hypothetical
           protein K06A4.4 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 295 CLSDNLNKMFLTD*YKKKKKNSRGGPVP 378
           C+  +L  MF     +KKKKN +  P+P
Sbjct: 209 CMDGSLLSMFFVYPTEKKKKNLKSSPIP 236


>U80840-11|AAB37935.3|  392|Caenorhabditis elegans Hypothetical
           protein F08D12.12 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 295 RILRSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPP 182
           R L+ G+K Q S     ++  K P   M+  R+L +PP
Sbjct: 98  RFLKRGVKSQLSNSSSAEQCGKPPDPTMKNIRELLQPP 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,455,601
Number of Sequences: 27780
Number of extensions: 211822
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)