Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    29   0.038
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.3  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 28.7 bits (61), Expect = 0.038
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 6   ENYLSHLCAGRHRRGQAD--TFKRTIGGGTCSGNRNKLSVLPSHQQRISCI 152
           E++ +   A RHRR   D  +FK  +    C+ N   L     H +++ CI
Sbjct: 30  EHFENEERADRHRRVTCDLLSFKGQVNDSACAANCLSLGKAGGHCEKVGCI 80


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 295 CLSDNLNKMFLTD*YKKKKK 354
           CLS  L    LTD YKK KK
Sbjct: 277 CLSTRLFYYQLTDLYKKIKK 296


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 292 ILRSGIKRQHSRQGQRDRGPKLPKGQME 209
           ++  G+   H RQ +   GP +P+G ++
Sbjct: 117 LVLGGLMMVHERQDRLTCGPVMPQGGVQ 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,222
Number of Sequences: 438
Number of extensions: 2810
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)