Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14450.1 68418.m01691 GDSL-motif lipase/hydrolase family prot...    30   0.82 
At4g38270.1 68417.m05406 glycosyl transferase family 8 protein c...    28   3.3  
At5g13050.1 68418.m01496 5-formyltetrahydrofolate cyclo-ligase (...    28   4.4  
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    27   5.8  
At2g25940.1 68415.m03113 vacuolar processing enzyme alpha / alph...    27   5.8  

>At5g14450.1 68418.m01691 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, pollen-expressed coil protein
           [Medicago sativa] GI:1110502; contains InterPro Entry
           IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 389

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 117 LRACCGYHCRCRHQWCA*K 61
           L+ CCGYH +  H WC  K
Sbjct: 313 LKVCCGYHEKYDHIWCGNK 331


>At4g38270.1 68417.m05406 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 680

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 265 HSRQGQRDRGP-KLPKGQMERHRQLKRPPVRHKRQGQQRMQLIR 137
           HS   Q D    + P        +LKR  +R +R+GQ+ ++LIR
Sbjct: 131 HSTTNQTDESENQFPNVDFASPAKLKRQILRQERRGQRTLELIR 174


>At5g13050.1 68418.m01496 5-formyltetrahydrofolate cyclo-ligase
           (5-FCL) nearly identical to gi:22087553
          Length = 277

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 400 YYNSLAVVLQRRDWEKPWRYPT*XALQHIP 489
           YY++     Q R  EK WRYP   AL + P
Sbjct: 211 YYDTFLKRYQDRAKEKGWRYPLMVALSYSP 240


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -2

Query: 271 RQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQGQQR 152
           R  SR   R R P+ P     R+R     P   +R G  R
Sbjct: 154 RSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRRRGGPPR 193


>At2g25940.1 68415.m03113 vacuolar processing enzyme alpha /
           alpha-VPE identical to SP|P49047 Vacuolar processing
           enzyme, alpha-isozyme precursor (EC 3.4.22.-)
           (Alpha-VPE) {Arabidopsis thaliana}
          Length = 478

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 319 MFLTD*YKKKKKNSRGGPVPNSPYXESYYNSL 414
           +F+ D   K ++N R G + NSP  E  YN +
Sbjct: 83  VFMYDDIAKNEENPRPGVIINSPNGEDVYNGV 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,992,242
Number of Sequences: 28952
Number of extensions: 198668
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)