Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    34   0.011
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    31   0.079
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.32 
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    29   0.56 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   1.3  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   1.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.9  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    25   5.2  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    25   6.8  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   6.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   6.8  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   9.0  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    25   9.0  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   9.0  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 300 QNFNANSNSQQYGSESGDNYPTNNSISGNENS 395
           QN+N N+N+Q YG+ +  NY  NN+ S   NS
Sbjct: 611 QNYN-NNNNQNYGNNNNQNYNNNNNSSQGGNS 641



 Score = 33.9 bits (74), Expect = 0.015
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = +3

Query: 231 SNMGNFHNSNFSDIGYPQ------MGGYDQNF----NANSNSQQYGSESGDNYPTNNSIS 380
           SN GN++N+N  +           + G   +F    + NSN Q Y + +  NY  NN+ +
Sbjct: 569 SNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQN 628

Query: 381 GNENSYDSQ 407
            N N+  SQ
Sbjct: 629 YNNNNNSSQ 637



 Score = 32.3 bits (70), Expect = 0.045
 Identities = 27/114 (23%), Positives = 46/114 (40%)
 Frame = +3

Query: 9   SPTSSYQDYQNALISQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHAL 188
           S TS+ +   + L S    A S L     +   N  +       ++    QQ +    +L
Sbjct: 534 SNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSL 593

Query: 189 EMQKTXXXXXXXXXSNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESG 350
           +   +         SN  N++N+N  + G       +QN+N N+NS Q G+  G
Sbjct: 594 QGLASSFLNSSSGNSNKQNYNNNNNQNYG----NNNNQNYNNNNNSSQGGNSQG 643



 Score = 26.6 bits (56), Expect = 2.2
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
 Frame = +3

Query: 240 GNFHNSNFSDIGYPQMGGYDQNFNANSNSQ-QYGSESGDNYPTN--NSISGNEN--SYDS 404
           GN +N+N S+      G Y+ N + N+N Q Q  S S     ++  NS SGN N  +Y++
Sbjct: 561 GNNNNNNNSN-----SGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNN 615

Query: 405 QIFEQIAKQKKENIEDPDLSN 467
              +       +N  + + S+
Sbjct: 616 NNNQNYGNNNNQNYNNNNNSS 636



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +3

Query: 231 SNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQI 410
           +N  N  N+N +      M     + +  ++S  +   SG+N   NNS SGN N+ +S  
Sbjct: 524 NNNSNTSNNNSNTSNNESMVSKLSSLSGMASS--FLGSSGNNNNNNNSNSGNYNNNNSGN 581

Query: 411 FEQIAKQKKENIE 449
             Q  +Q   +++
Sbjct: 582 NNQQHQQSSSSLQ 594


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +3

Query: 252 NSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQ 431
           N + ++ GYP   G   N + N+N      E  D  P +N    N++S +S   E+  +Q
Sbjct: 13  NGDKNEDGYPAENGEGTNVDDNNN-----EEEKDGIPLDNDNDENDSSEESATDEEAERQ 67

Query: 432 KKEN--IEDPD 458
            +E   +ED +
Sbjct: 68  VREGFIVEDEE 78


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
 Frame = +3

Query: 231 SNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQ- 407
           ++  N  NSN     Y Q+G    N   + N+ +   ES   Y    SIS NE + ++  
Sbjct: 32  TSSSNSENSNIQGKHYTQVGEDADNSFISENTPKNTFESTQTYENLESISKNEPTSEASK 91

Query: 408 -IFEQIAKQKKENIEDPDLSNLPNVNFSVPP-PGFKPL 515
            +  ++  ++    E P    LPN      P PG  PL
Sbjct: 92  PLLNELVPEEPLPREPP----LPNEPVPEEPLPGEPPL 125


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 20/108 (18%), Positives = 45/108 (41%)
 Frame = +3

Query: 51  SQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQKTXXXXXXXXX 230
           S  +++ +    ++KS   ++Q+ H   +       + L    +   +++          
Sbjct: 619 SVRSSSYNSTASESKSEITSHQNLHTIPINKPFTSDRPLYSSPNDT-LERVETGNQGQRM 677

Query: 231 SNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNS 374
           +++GN  + +  DI   + G +D N    +N     S  G N P+N+S
Sbjct: 678 NSIGNASSFSKRDIMENENGSFDTNAKNGNNVDDSSSVRGMNLPSNSS 725


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
 Frame = +3

Query: 312 ANSNSQQYGSESG------DNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLSNLP 473
           A+S   QY +E G      D Y +  S   N    D+  F  +    + N  DP   +L 
Sbjct: 85  ASSGINQYSTEKGKFTRPSDEYESEYS-DYNAQPSDANNFYNLRGDGRYNAYDPSSDSLA 143

Query: 474 NVNFSVPPPGFKPLD 518
           NV  SV P G  P D
Sbjct: 144 NVYNSV-PYGSSPYD 157


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 342 ESGDN--YPTNNSISGNENSY--DSQIFEQIAKQKKENIEDPDLS 464
           ESG+N  +P N S       Y  D+QI EQI K  +  +  PDLS
Sbjct: 89  ESGENSDHPLNTSDDSKWKEYFDDNQILEQIDKDIRRTL--PDLS 131


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 48   ISQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQK 200
            I +  +   HL+ + K      + QH+ F     Q++ QL   K  ++ Q+
Sbjct: 1697 IRRRDDRCEHLSGKLKKLHSQLEEQHETFFRAEQQRMTQLGFLKETVKKQE 1747


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = +3

Query: 297 DQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLSNLPN 476
           D+N   N   Q YG +   N  +NN  + N   Y   I  +I     EN+   +LS  P+
Sbjct: 322 DENLPYNDYLQYYGPDYKLNVLSNNMENHNTRQYLDSITSEII----ENLR--NLSFAPS 375

Query: 477 VNFSVPPPGF 506
           V     P  F
Sbjct: 376 VQMHKTPGDF 385


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = +3

Query: 231 SNMGNFHNSNFSDIGYPQMGGYDQNF---NANSNSQQYGSESGDNYPTNNSIS--GNENS 395
           SN     N+    +G      Y  N    N NSNS    S +  NY ++N+    G  N+
Sbjct: 22  SNSNTATNAPSYSVGGTTANSYSSNSYNDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNT 81

Query: 396 YDS 404
           Y S
Sbjct: 82  YGS 84


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 354 NYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPD 458
           ++P   ++ GN   Y   I   + + +KEN+   D
Sbjct: 44  SFPIKPNVKGNNEKYFKSITSDLYEWQKENLNKED 78


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 210 FLEFFASQGHVFAFPIVVFVA 148
           F  FF SQGH F   + +F A
Sbjct: 423 FFGFFGSQGHWFTSSVFLFTA 443


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 13  PPAPTKIIRTP*SHSMRMLFRI*HSKLNLLLRIINHNTKLLLVTQCNKYN 162
           P AP+K++           +RI + KL     +++   +L     C KYN
Sbjct: 139 PSAPSKLVIVANFDLKAFNYRIMYQKLYDSSEVLDDRIELFSALTCRKYN 188


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 252 NSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENS 395
           + +F   GY Q+GG + +   ++      S       + NS S NE S
Sbjct: 86  SDSFPTFGYSQLGGLENSSKGSALFNSANSIGTPYLSSRNSNSANEAS 133


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 447 QYFLSFALLFVQIFGYHNYSHFH*YCCLLGNYPHFHYH 334
           QYF +F ++    + +H Y H   Y   L N  H H+H
Sbjct: 133 QYFFAFFIIDSWQYFWHRYLH---YNKKLYNMIHAHHH 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,066
Number of Sequences: 5004
Number of extensions: 30508
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)