Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303H08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 31 0.56
01_05_0299 - 20595919-20595963,20596111-20596221,20596901-205969... 31 0.74
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 30 0.98
07_01_1179 + 11184521-11184536,11184593-11184691,11184790-111848... 30 0.98
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 30 0.98
09_04_0475 - 17913982-17914772,17914830-17915156,17915323-179154... 29 2.3
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 29 2.3
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 29 3.0
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 28 4.0
01_06_1475 + 37634831-37636297 28 5.2
01_06_0056 - 26037940-26039421 28 5.2
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 27 6.9
01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233... 27 6.9
>04_03_0941 - 20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 31.1 bits (67), Expect = 0.56
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Frame = +3
Query: 240 GNFHNSNFSDIGY-------PQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENS 395
G + S+ +D GY P G YD NA SN+ YG + T+NS SG S
Sbjct: 834 GGYKKSSSNDDGYGGSGYSKPSTGDYDSGKNA-SNTDGYGGSGYNKSSTDNSESGYNKS 891
>01_05_0299 -
20595919-20595963,20596111-20596221,20596901-20596984,
20597350-20597450,20597584-20598301
Length = 352
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 249 HNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGD 353
+N+N + G+ +MGGY+ + N N YG GD
Sbjct: 115 NNNNVNAFGFNKMGGYNNSSNGGGN---YGGNGGD 146
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 30.3 bits (65), Expect = 0.98
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 234 NMGNFH-NSNFSDIGYPQMG-GYDQNFNA-NSNSQQYGSESGDNYPTNNSISGNENS 395
N G +H N N GY Q G GY QN N N N +Y ++GD Y N + +G+ +
Sbjct: 478 NGGGYHQNGN----GYHQNGDGYHQNGNRYNQNGNRY-HQNGDEYYQNGNGNGHRQN 529
>07_01_1179 +
11184521-11184536,11184593-11184691,11184790-11184852,
11185011-11185084,11185187-11185261,11185371-11185514,
11185629-11185733,11185839-11186276,11187102-11188241,
11188320-11188493
Length = 775
Score = 30.3 bits (65), Expect = 0.98
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 297 DQNFNANSNSQQYGSESGDNYPTNNSISG----NENSYDSQIFEQIAKQKKENIEDPDLS 464
D+ N + + G++ + NNS S NE S ++ I I + +++ IEDPD++
Sbjct: 599 DEKLNTMFSHEFEGADKQQGHEENNSFSPTAEVNEKSENTHIHGDI-RNEEDYIEDPDIA 657
Query: 465 N 467
N
Sbjct: 658 N 658
>05_01_0167 -
1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 30.3 bits (65), Expect = 0.98
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 297 DQNFNANSNSQQYGSESGDNYPTNNSISG----NENSYDSQIFEQIAKQKKENIEDPDLS 464
D+ N + + G++ + NNS S NE S ++ I I + +++ IEDPD++
Sbjct: 772 DEKLNTMFSHEFEGADKQQGHEENNSFSPTAEVNEKSENTHIHGDI-RNEEDYIEDPDIA 830
Query: 465 N 467
N
Sbjct: 831 N 831
>09_04_0475 -
17913982-17914772,17914830-17915156,17915323-17915493,
17915583-17915824,17915862-17916049,17916184-17916253,
17916329-17916612
Length = 690
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 366 NNSISGNENSYDSQIFEQIAKQKKENIEDPDLSNLPNVNF 485
N GNE S + + + K ENI D +SN N+ F
Sbjct: 568 NLDAPGNEKSLSMRFLSAMKENKLENILDDQISNEENMEF 607
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 29.1 bits (62), Expect = 2.3
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Frame = +3
Query: 273 GYPQMGGYDQNFNA---NSNS-QQYGSESGDNYPTNNSISGNENSYDSQIFEQIA---KQ 431
GY G +F++ NSNS Q+G SG +NN G+ S+ ++ + +
Sbjct: 597 GYGSQSGNGSSFHSSFHNSNSGNQFGDTSGFQTSSNNDQPGDGLSFHARFYSSSRGSDQS 656
Query: 432 KKENIEDPDLSNLPNVNFSVPPPGFK 509
+ N D S P N + PG K
Sbjct: 657 RTNNAGFRDRSRSPPSNRNHEDPGSK 682
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 69 ISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQKTXXXXXXXXXSNMGNF 248
+ L QQ + Q Q Q QQ QQL++Q+HAL +Q+ S+
Sbjct: 962 VQQLNQQMVLWQQQVQQQQQQQQQQQQQQ-QQLQLQQHALPVQQQPDQKYSQLPSSGDTR 1020
Query: 249 HNSN 260
H N
Sbjct: 1021 HEQN 1024
>01_07_0167 - 41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 309 NANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLSN 467
N +SN ++ N T + + EN+ + Q E+ ++E+I+DPD++N
Sbjct: 862 NLDSNLDLIIEDAAQNQATIDESNTVENTSEDQA-EKETTNEQEDIQDPDIAN 913
>01_06_1475 + 37634831-37636297
Length = 488
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 249 HNSNFSDIGYPQMGGYDQNFNANSN--SQQYGSESG 350
H S+ +D+ GG++Q ++SN SQQ G +SG
Sbjct: 48 HGSDMADLVPSGQGGHEQGGGSSSNGQSQQGGGDSG 83
>01_06_0056 - 26037940-26039421
Length = 493
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 288 GGYDQNFNANSN-SQQYGSESGDNYPTNNSISG 383
GG D N N+NSN S GS+S ++ +N SG
Sbjct: 452 GGGDNNNNSNSNVSGSSGSDSNNSGSSNGKSSG 484
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 327 QQYGSESGDNY-PTNNSISGNENSY 398
+QYG +NY NNS +GN NSY
Sbjct: 500 EQYGMRYRNNYIGYNNSSNGNNNSY 524
>01_07_0255 -
42322111-42322308,42322658-42322750,42323127-42323344,
42323476-42323642,42324097-42324207,42324267-42324409,
42324492-42324710,42324975-42325055,42325202-42325381,
42325971-42326301,42326775-42326888,42327036-42327127,
42327631-42328059
Length = 791
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 36 QNALISQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKH 182
Q L+ +H HL++ K E +++ F+ Q+QQ+ Q+H
Sbjct: 654 QYKLLDKHGYGNEHLSRIEKECVE-IDIKYEGFIARQQSQLQQIVNQEH 701
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,678,578
Number of Sequences: 37544
Number of extensions: 165463
Number of successful extensions: 633
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -