Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303H08f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60380.1 68416.m06753 expressed protein 35 0.038
At1g15780.1 68414.m01893 expressed protein 31 0.47
At1g62220.1 68414.m07018 expressed protein 30 0.82
At1g55080.1 68414.m06291 expressed protein 29 1.4
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 29 1.4
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100... 29 1.9
At5g62570.1 68418.m07852 calmodulin-binding protein similar to c... 28 4.4
At5g18270.2 68418.m02148 no apical meristem (NAM) family protein... 27 5.8
At5g18270.1 68418.m02147 no apical meristem (NAM) family protein... 27 5.8
At3g18810.1 68416.m02389 protein kinase family protein contains ... 27 5.8
At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger) fa... 27 5.8
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 27 5.8
At2g45620.1 68415.m05672 nucleotidyltransferase family protein l... 27 5.8
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 5.8
At1g32130.1 68414.m03953 IWS1 C-terminus family protein contains... 27 5.8
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1... 27 7.7
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 27 7.7
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 27 7.7
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 27 7.7
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 27 7.7
>At3g60380.1 68416.m06753 expressed protein
Length = 743
Score = 34.7 bits (76), Expect = 0.038
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 237 MGNFHNSNFSDIGYPQ-MGGYDQNFNANSNSQ-QYGSESGDNYPTNNSISGNE-NSYDSQ 407
+G+ + SNF I + + +S+SQ Y S++ + + + S+S NS +
Sbjct: 266 IGDNYPSNFQPISVDETLKSISSRSTGSSSSQTSYASQNQNRFSPSRSVSAESLNSNVEE 325
Query: 408 IFEQIAKQKKENIEDPDLSNLPNVNFSVPPPGFKPLD 518
+ ++ ++Q P L P+++ S P P P D
Sbjct: 326 LVKEKSRQSSSRSSSPSLPPSPSLSPSPPSPELVPND 362
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 3 MKSPTSSYQDYQNALISQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKH 182
++S + Q + L QH Q K F+ Q Q Q QQ QQL+ ++
Sbjct: 811 LQSNVNQPQLSSSLLQHQHLKQQQDQQMQLKQQFQQRQMQQQQLQARQQQQQQQLQARQQ 870
Query: 183 ALEMQK 200
A ++Q+
Sbjct: 871 AAQLQQ 876
>At1g62220.1 68414.m07018 expressed protein
Length = 153
Score = 30.3 bits (65), Expect = 0.82
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 315 NSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLS 464
+S+S Y S +G N P + EN Y S + IAK +K + S
Sbjct: 56 SSSSDVYSSATGFNNPKGPDANAYENGYTSTSGQVIAKGRKARVSSASAS 105
>At1g55080.1 68414.m06291 expressed protein
Length = 244
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 75 HLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQK 200
HL QQ ++ + Q Q Q MQQ QQ + Q+H ++ Q+
Sbjct: 53 HLQQQQQT--QQQQQQFQPQQQQEMQQYQQFQQQQHFIQQQQ 92
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +3
Query: 27 QDYQNALISQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQK 200
Q Q I Q HL QQ + Q QHQ QQ Q ++Q H + Q+
Sbjct: 692 QQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQ---QQQQQHQLSQLQHHQQQQQQ 746
>At1g28400.1 68414.m03492 expressed protein similar to E6
(GI:1000090) [Gossypium barbadense]
Length = 335
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Frame = +3
Query: 231 SNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPT----NNSISGNENSY 398
+N N N P + +++FN N ++ + +NY T N + N N Y
Sbjct: 103 NNNKNDEKVNSKTFSTPSLSETEESFN---NYEENYPKKTENYGTKGYNNEEFNNNNNKY 159
Query: 399 DSQIFEQIAKQK-KENIEDPDLSNLPNVN 482
D+ E+ K EN + +N N N
Sbjct: 160 DANFKEEFNNNKYDENYAKEEFNNNNNNN 188
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/66 (21%), Positives = 28/66 (42%)
Frame = +3
Query: 246 FHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIA 425
++N F++ + + FN N + Y E +N NN+ + YD + E+
Sbjct: 147 YNNEEFNNNNNKYDANFKEEFNNNKYDENYAKEEFNN---NNNNNNYNYKYDENVKEESF 203
Query: 426 KQKKEN 443
+ E+
Sbjct: 204 PENNED 209
>At5g62570.1 68418.m07852 calmodulin-binding protein similar to
calmodulin-binding protein TCB60 GI:1698548 from
[Nicotiana tabacum]
Length = 487
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 9 SPTSSYQDYQNALISQHANAISHLTQQTKSTFENYQSQHQAFVG 140
+P Y+DY N H + + +S +++ SQ A VG
Sbjct: 415 TPHGLYEDYDNLWNCSHILGLEEPQSELQSALDDFMSQKNASVG 458
>At5g18270.2 68418.m02148 no apical meristem (NAM) family protein
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to cup-shaped cotyledon CUC2
(GI:1944132) [Arabidopsis thaliana]
Length = 335
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 267 DIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENS 395
DI P + ++ + N Q +GS SG Y NN + E S
Sbjct: 234 DISSPIQPHHFNSYQSIFNHQVFGSASGSTYNNNNEMIKMEQS 276
>At5g18270.1 68418.m02147 no apical meristem (NAM) family protein
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to cup-shaped cotyledon CUC2
(GI:1944132) [Arabidopsis thaliana]
Length = 335
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 267 DIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENS 395
DI P + ++ + N Q +GS SG Y NN + E S
Sbjct: 234 DISSPIQPHHFNSYQSIFNHQVFGSASGSTYNNNNEMIKMEQS 276
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 231 SNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENS 395
+N N +N+N ++ G N N +N+ + DN NN+ + N+N+
Sbjct: 80 NNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNNDNN 134
>At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 279 PQMGGYDQNFNANSNSQQYGSESGDNYPTN 368
P++GG D++FN N + E + PTN
Sbjct: 142 PELGGRDKSFNQNHDQTSEHHEFSTDPPTN 171
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/86 (23%), Positives = 36/86 (41%)
Frame = +3
Query: 243 NFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQI 422
N N N + + GGY NS ++ Y +E ++ T + G+ S +++ Q+
Sbjct: 464 NIRNGNINGTDFSTAGGYMAKNKLNSLAEHYSAEG--SHLTGD---GDRQSL-NRLINQV 517
Query: 423 AKQKKENIEDPDLSNLPNVNFSVPPP 500
A + + DP S + S P
Sbjct: 518 ASELHSPVMDPHYSQYLHTASSTAAP 543
>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
similarity to SP|O13833| Caffeine-induced death protein
1 {Schizosaccharomyces pombe}; contains Pfam profiles
PF03828: PAP/25A associated domain, PF01909:
Nucleotidyltransferase domain
Length = 764
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 333 YGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIE----DPDLSNLPN 476
+GS SGD + N + YDS EQ+ + + + DP+LS+ N
Sbjct: 157 FGSFSGDATQSLNGLHNGNLKYDSNQHEQLMRHPQSTLSNSNMDPNLSHHRN 208
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 429 QKKENIEDPDLSNLPNVNFSVPPPGFKPL 515
Q+++N+ N+P S PPPGF P+
Sbjct: 285 QQQQNMSMYAGQNMPFYGHSQPPPGFNPM 313
>At1g32130.1 68414.m03953 IWS1 C-terminus family protein contains
Pfam PF05909: IWS1 C-terminus;
Length = 404
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 249 HNSNFSDIGYPQMGGYDQNFNANSN---SQQYGSESGDNYPTN--NSISGNENSYDSQIF 413
HN + G M D NF ++ S++YG ++GD PT+ + G + + +F
Sbjct: 58 HNPENDEEGVRTMD--DDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGEDEDEVNNLF 115
Query: 414 EQIAKQKKENIEDP 455
++ K+KK+ +P
Sbjct: 116 -KMGKKKKKTERNP 128
>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
plant glutamate receptor family, PMID:11379626
Length = 860
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 210 FLEFFASQGHVFAFPIVVFVALCDQQKLGVVIDN 109
F F G FAF + V V LC + K +++DN
Sbjct: 787 FRGLFIIIGVSFAFALAVLVILCLRDKWEILVDN 820
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 270 IGYP-QMGGYDQNFN--ANSNSQQYGSESGDNYPTNNS 374
IG P G + N N +NSNSQQ+ SG +P + S
Sbjct: 534 IGSPINQGSHRGNLNLWSNSNSQQHNQSSGMMWPNSPS 571
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 78 LTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQK 200
L+QQT+S +QS QA + QQ+Q ++ L + +
Sbjct: 511 LSQQTQSLQATFQSSQQA-ISQLQQQVQSMQQPNQNLPLSQ 550
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 78 LTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQK 200
L+QQT+S +QS QA + QQ+Q ++ L + +
Sbjct: 269 LSQQTQSLQATFQSSQQA-ISQLQQQVQSMQQPNQNLPLSQ 308
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 136 TKAWCCD**FSKVDLVCCVRCE--IAFACCEI 47
TK CD +S D++CC CE + F C +
Sbjct: 523 TKCSACDITYSARDMLCCDECEFRLDFRCATL 554
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,457
Number of Sequences: 28952
Number of extensions: 147581
Number of successful extensions: 686
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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