Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   174   6e-45
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   1.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   1.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.2  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   5.2  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   6.8  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    25   9.0  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  174 bits (424), Expect = 6e-45
 Identities = 86/171 (50%), Positives = 121/171 (70%), Gaps = 2/171 (1%)
 Frame = +3

Query: 15  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 188
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 369 YDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSV 521
           ++AIL D+VFP EI+GKR R   DG + IKV LD     T+++ + +F SV
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSV 174


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 307 LGLGRILRSPTKTTCLPLNFFSSSRTS 227
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +3

Query: 264  HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILXDLVFPAEIVGKRIRVKLDG 443
            H V V D+ +   P       N+Q   R  +L+ + D +    V   E V  R   K  G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650

Query: 444  SQLIKVHLD-KNQQTTIEH 497
            S ++   LD K+ Q   EH
Sbjct: 1651 SYILNPSLDLKHTQEMFEH 1669


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 280  ETVRSCLSPATKPVLLTNKRGHAQ 351
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 177 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 269
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 351 RTLTSVYDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTF 512
           ++L + YD +  DL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKF 615


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 484 VCWFLSKCTLMSCEPSNLTLMR 419
           +C FL K T  SC   NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 234 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILXDLVFPAEIV 413
           ++LEK+F G       +  + PK     +   K    RSR L   + A + + VF     
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166

Query: 414 GKRIRV 431
           G  IR+
Sbjct: 167 GVDIRL 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,139
Number of Sequences: 5004
Number of extensions: 36177
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)