Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...   166   1e-41
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...   151   4e-37
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     73   2e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168     29   1.7  
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634...    29   3.0  
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628...    29   3.0  
03_02_0488 - 8824980-8825267,8825364-8827775                           29   3.0  
06_02_0105 - 11893666-11895483,11895661-11896422                       28   4.0  
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    28   5.2  
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    28   5.2  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    27   9.1  
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872           27   9.1  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score =  166 bits (403), Expect = 1e-41
 Identities = 84/171 (49%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
 Frame = +3

Query: 15  KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
           KI K  G E   FE S++QA  +LE  N +LK++L++LYI  A ++++  N+K+++I+VP
Sbjct: 7   KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66

Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
               KAF+KI +RLVRELEKKFSGK VV V  R+I+  P   + V    +RPR+RTLT+V
Sbjct: 67  YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122

Query: 369 YDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSV 521
           +D IL D+V+PAEIVGKRIR +LDG+++IK+ LD  ++   E+ ++TF +V
Sbjct: 123 HDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAV 173


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score =  151 bits (365), Expect = 4e-37
 Identities = 78/153 (50%), Positives = 109/153 (71%), Gaps = 2/153 (1%)
 Frame = +3

Query: 69  QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 242
           QA  +LE  N +LK+ L++LYI  A +++L  N+K++IIYVP    KA++KI +RLVREL
Sbjct: 38  QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97

Query: 243 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILXDLVFPAEIVGKR 422
           EKKFSGK VV V  R+I+  P   + V     RPR+RTLT+V+D IL D+V+PAEIVGKR
Sbjct: 98  EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153

Query: 423 IRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSV 521
           +R  LDG +++K+ LD  ++   E+ +DTF SV
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSV 186


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 41/98 (41%), Positives = 62/98 (63%)
 Frame = +3

Query: 123 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 302
           +Y+    ++   N K ++I+V     KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +
Sbjct: 31  MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88

Query: 303 PSHKTRVANKQKRPRSRTLTSVYDAILXDLVFPAEIVG 416
           P +K    +    PR+RTL +V+D IL D+V    ++G
Sbjct: 89  PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123


>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
          Length = 336

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 337 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 221
           F L A+  L L L  +L   T   CLPL FF+ +  SL+
Sbjct: 4   FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42


>04_01_0483 +
           6343599-6343778,6343886-6344011,6344096-6344173,
           6344859-6344984,6345253-6345354,6345425-6345571,
           6345861-6345984,6346992-6347152
          Length = 347

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 75  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 209
           LVE+    D   ++ + Y+     + L++K  +++Y+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157


>04_01_0480 +
           6279576-6279755,6279863-6279988,6280074-6280151,
           6280847-6280972,6281244-6281345,6281416-6281490,
           6281852-6281975,6283005-6283107,6283546-6283617,
           6283662-6283788,6284125-6284180,6284438-6284453
          Length = 394

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 75  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 209
           LVE+    D   ++ + Y+     + L +K  ++IY+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +3

Query: 24  KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 200
           ++SG   + FET +S A++E+E N+ L        +  +K+I  H++   I Y  P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358

Query: 201 KAFQKI 218
            + +++
Sbjct: 359 DSSEEL 364


>06_02_0105 - 11893666-11895483,11895661-11896422
          Length = 859

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 31/158 (19%), Positives = 64/158 (40%)
 Frame = +3

Query: 6   MSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV 185
           + T++IK   A A   +   + ++       +++  LREL   +AKE E  N    +  +
Sbjct: 541 LKTELIKEKTALATMKQMEATSSIAAASLRVEIQLALRELEAVQAKEKESRNGMLGLQKI 600

Query: 186 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 365
                K   + +  + RE ++K           +  L     + +   K+      ++  
Sbjct: 601 MEDTAKEADESK-SIAREAQEKLRKAKEDMDHAKSCLDTMEFRIQAVLKEMEATKESMRL 659

Query: 366 VYDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQ 479
             DA+     F +E+    + ++  GSQ++ V LD+ Q
Sbjct: 660 AIDALRP---FDSEL---PVDIEEQGSQIVTVDLDEYQ 691


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 393 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 497
           +FPA I G  +  KLD ++L K H D+ +   ++H
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDH 622


>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +3

Query: 75  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 209
           LVE+    D   ++ + Y+     + L +K  +++Y+   K+  F
Sbjct: 80  LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 347  AWPLLFVSNTGFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQF 195
            AW  L +S++  ++     L +S KD+M   +L FE  D+P +       F
Sbjct: 1167 AWKSLAISSSAMLS-----LMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212


>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
          Length = 91

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 72  ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 182
           A++E+E N DL +    L  T+  E   H + S++IY
Sbjct: 2   AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,703,836
Number of Sequences: 37544
Number of extensions: 240688
Number of successful extensions: 664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)