Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303H05f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 161 3e-40
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 161 3e-40
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 159 8e-40
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 156 1e-38
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 156 1e-38
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 1.9
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 28 3.3
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 4.4
At3g54650.1 68416.m06046 F-box family protein (FBL17) contains s... 27 5.8
At5g40640.1 68418.m04933 expressed protein 27 7.7
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 27 7.7
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 7.7
At3g06180.1 68416.m00710 expressed protein 27 7.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 161 bits (391), Expect = 3e-40
Identities = 82/171 (47%), Positives = 121/171 (70%), Gaps = 2/171 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 369 YDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSV 521
++A+L D+ +PAEIVGKR R +LDG++++KV LD + E+ ++T V
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGV 173
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 161 bits (391), Expect = 3e-40
Identities = 82/171 (47%), Positives = 121/171 (70%), Gaps = 2/171 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 369 YDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSV 521
++A+L D+ +PAEIVGKR R +LDG++++KV LD + E+ ++T V
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGV 173
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 159 bits (387), Expect = 8e-40
Identities = 84/171 (49%), Positives = 119/171 (69%), Gaps = 2/171 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 369 YDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSV 521
++A+L D+ FPAEIVGKR R +LDGS+++KV LD ++ E+ ++T V
Sbjct: 123 HEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGV 173
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 156 bits (378), Expect = 1e-38
Identities = 79/171 (46%), Positives = 119/171 (69%), Gaps = 2/171 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 188
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 369 YDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSV 521
++AIL D+V PAEIVGKR R +LDG++++KV LD ++ E+ V+ F +V
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAV 173
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 156 bits (378), Expect = 1e-38
Identities = 79/171 (46%), Positives = 119/171 (69%), Gaps = 2/171 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 188
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 369 YDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSV 521
++AIL D+V PAEIVGKR R +LDG++++KV LD ++ E+ V+ F +V
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAV 173
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -2
Query: 448 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 347
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 402 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSV 521
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +3
Query: 150 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 299
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At3g54650.1 68416.m06046 F-box family protein (FBL17) contains
similarity to F-box protein FBL2 GI:6010699 from [Rattus
norvegicus]
Length = 593
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 353 DIDLCVRCYPRXLGLPC*DRRQAH-QGQVGRLTAH*GALRQKPTDNY*TXSGHLP 514
+++LC +P L L C + + G G LT GA+R++ ++N+ H+P
Sbjct: 499 NLNLCSNLHPESLVLQCPKLQLVYASGCQGLLT---GAIRKQVSENFSAGENHMP 550
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 207 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 374
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 27.1 bits (57), Expect = 7.7
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = +3
Query: 12 TKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHNKKSIIIY 182
T +KA SF+ I + +EL T+ DL+ E EI EL K +
Sbjct: 554 TSSVKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSKKVVDLTS 613
Query: 183 VPMPKLKAFQKIQIRLVRELEKKFSG 260
V + KA ++ L K +G
Sbjct: 614 VAQGEKKAVHDAKVELAAAYSKLLAG 639
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 82 NSKPTPTSKPNFGSF 126
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At3g06180.1 68416.m00710 expressed protein
Length = 241
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = -2
Query: 124 SSRSWALRSELVSSSTSACEIEVSKESASAPLALMIFVLIL 2
+SRS + S SSS+S+ + + K S SA L L+I +L+L
Sbjct: 24 ASRSASNHSSSSSSSSSS--LHLCKHSPSATLDLLILILVL 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,257,241
Number of Sequences: 28952
Number of extensions: 195479
Number of successful extensions: 601
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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