Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H04f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.6  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   8.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.7  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   8.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.7  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 386 FPVTSAGMLWLICSSTV 336
           F V   G +WL+ SSTV
Sbjct: 489 FLVNDFGFIWLVLSSTV 505


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 339 RDPEESEKDEQQAKEQXXXXXXXXXXXXVHED 244
           R+ +E  K +QQ K+Q             H D
Sbjct: 79  REEQERHKQQQQEKQQKIEQQTHSSIHQHHHD 110


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 353 STTTSQRWSRGSTPRSLNTSRANNHHIKPIEW 448
           STT    W+R  +  S + S+      KP +W
Sbjct: 405 STTPRPEWARPPSTPSADGSKPVQTTPKPGQW 436


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +3

Query: 333 GHGRRTNQPQHPSAGHGEAH 392
           GH  +   PQH    H + H
Sbjct: 168 GHHMQEQHPQHHQPHHQQQH 187


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 162 QKQELQRVQQVGRYLQPMKPLAPVFHSS 245
           Q+Q    +      L+P   L+P+FHS+
Sbjct: 94  QQQAGANMAAAANLLRPHPYLSPLFHSA 121


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +3

Query: 333 GHGRRTNQPQHPSAGHGEAH 392
           GH  +   PQH    H + H
Sbjct: 170 GHHMQEQHPQHHQPHHQQQH 189


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 339 RDPEESEKDEQQAKEQXXXXXXXXXXXXVHED 244
           R+ +E  K +QQ K+Q             H D
Sbjct: 230 REEQERHKQQQQEKQQKIEQQTHSSIHQHHHD 261


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 339 RDPEESEKDEQQAKEQXXXXXXXXXXXXVHED 244
           R+ +E  K +QQ K+Q             H D
Sbjct: 289 REEQERHKQQQQEKQQKIEQQTHSSIHQHHHD 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,127
Number of Sequences: 336
Number of extensions: 2211
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)