Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   104   9e-24
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   101   9e-23
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   1.7  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   3.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   3.9  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   3.9  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   9.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  104 bits (249), Expect = 9e-24
 Identities = 48/74 (64%), Positives = 57/74 (77%)
 Frame = -3

Query: 519 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 340
           IALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FY
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFY 206

Query: 339 RDPEESEKDEQQAK 298
           RDPEE E++E+  K
Sbjct: 207 RDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  101 bits (241), Expect = 9e-23
 Identities = 46/72 (63%), Positives = 56/72 (77%)
 Frame = -3

Query: 519 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 340
           IALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FY
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFY 207

Query: 339 RDPEESEKDEQQ 304
           RDPEE E++E+Q
Sbjct: 208 RDPEEIEREEEQ 219


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 519 IALCNTDSPLRFVDIAIPCNTKSSHSI 439
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 441 IGLMWWLLAREVLRLRGVLPRDQRWD 364
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 386 FPVTSAGML--WLICSSTVTLKKVKRM 312
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 196 PTCCTRCSSCFWSTP 152
           PTCC   SSC +S P
Sbjct: 41  PTCCVVGSSCIYSNP 55


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = -3

Query: 513 LCNTDSPLRFVD--IAIPCNTKSSHSI-GLMWWLLAREVLRLRGVLPRDQRWDV 361
           L   D  ++  D  +A   N    HS+ G  +W+ A EV+ L G       W V
Sbjct: 138 LTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,164
Number of Sequences: 5004
Number of extensions: 33812
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)