Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               118   4e-27
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   33   0.19 
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   1.3  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               29   2.3  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   3.1  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 28   5.4  
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)                        28   5.4  
SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)                    27   7.1  
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)                27   7.1  
SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)                  27   9.4  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  118 bits (283), Expect = 4e-27
 Identities = 51/73 (69%), Positives = 61/73 (83%)
 Frame = -3

Query: 519 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 340
           IA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAREVLR+RG + R   W+++ DL+FY
Sbjct: 145 IAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFY 204

Query: 339 RDPEESEKDEQQA 301
           RDPEE+EK+EQ A
Sbjct: 205 RDPEEAEKEEQAA 217


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 350  KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE 499
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTE 1444


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 447 HSIGLMWWLLAREVLRLRGVLP 382
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 172  SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 71
            +C W+ P   R+  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 345 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 464
           R  QP H ++ +  A HH A  LH P  +TS   +   W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 389 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 511
           T +SLN S  N   + P EW + V+ G+     LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 337 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 486
           +V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 501 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 370
           +SPL +  I +PCNT +S+     W+LLA  +  ++ VL  D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533


>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
          Length = 594

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 371 RWSRGSTPRSLNTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSGESVLH 511
           RWS  +TPR   TS     N  H+ P+  + D+  H  A + +L   S ++
Sbjct: 62  RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112


>SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)
          Length = 195

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 345 RTNQPQHPSAGHGEAHHEASTLHVPTTTTSNQ*SGKT 455
           R ++P  P   HG  H++ ST   P    SN+  G T
Sbjct: 155 RVHRPATPGREHGVQHNQISTSCEPEFAQSNETGGLT 191


>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
          Length = 1202

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +3

Query: 330  QGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTT--TSNQ*SGKTWCCMG*QCPQILVGSL 503
            Q HG  +NQP         +H    + H+PT    TS   +  T      QCP    GS+
Sbjct: 1067 QEHGPGSNQPSDKIHSPATSHTSPVSTHLPTPNCHTSTPHTTTTTPNSNEQCPNTAAGSV 1126


>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
          Length = 691

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 141 LLEQGVLQKQELQRVQQVGRYLQPMKPLAPVFHSSL 248
           L  QGV+Q+ E      VGRY +P   L P   S+L
Sbjct: 430 LESQGVVQRPEDIGFADVGRYSKPQPSLMPNVDSTL 465


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,572
Number of Sequences: 59808
Number of extensions: 280907
Number of successful extensions: 783
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)