Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   107   4e-24
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   102   2e-22
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    78   3e-15
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   2.5  
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    28   4.4  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    27   5.8  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  107 bits (257), Expect = 4e-24
 Identities = 47/77 (61%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
 Frame = -3

Query: 519 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 340
           IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFY
Sbjct: 149 IAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFY 208

Query: 339 RDPEESE-KDEQQAKEQ 292
           R+PEE++ +DE +A  Q
Sbjct: 209 REPEETKPEDEDEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  102 bits (244), Expect = 2e-22
 Identities = 43/75 (57%), Positives = 58/75 (77%)
 Frame = -3

Query: 519 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 340
           IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFY
Sbjct: 150 IAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFY 209

Query: 339 RDPEESEKDEQQAKE 295
           R+PEE++++  +  E
Sbjct: 210 REPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 33/56 (58%), Positives = 43/56 (76%)
 Frame = -3

Query: 519 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 352
           IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 150 IAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 501 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 364
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 315 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 437
           P +FL G GRR NQ      G  + + +++  H+P     N
Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 442 RVGRLGVAWDSNVHKS 489
           R GR+G  WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,440,406
Number of Sequences: 28952
Number of extensions: 186974
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)