Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H03f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LK21 Cluster: Putative uncharacterized protein; n=2; ...    32   6.9  
UniRef50_A3IN83 Cluster: Putative uncharacterized protein; n=1; ...    32   6.9  
UniRef50_A0P063 Cluster: Transcriptional regulator, LacI family ...    32   9.2  
UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1; Guill...    32   9.2  

>UniRef50_Q6LK21 Cluster: Putative uncharacterized protein; n=2;
           Photobacterium profundum|Rep: Putative uncharacterized
           protein - Photobacterium profundum (Photobacterium sp.
           (strain SS9))
          Length = 601

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 164 VGRFVKSEINMCMFISRFVVIQRTCLRFSNRELLKVTNSFELIYVRYKSKS 12
           V +F+  ++N    I+ F  I +      N ELL +T+S   +Y RYK +S
Sbjct: 410 VHKFITPDVNADGMINGFTTIVQNITDKKNIELLSITDSLTGLYNRYKLES 460


>UniRef50_A3IN83 Cluster: Putative uncharacterized protein; n=1;
           Cyanothece sp. CCY 0110|Rep: Putative uncharacterized
           protein - Cyanothece sp. CCY 0110
          Length = 331

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -3

Query: 432 CG*LHSLLNNLTQHTILLCTSRFNFYKY*RRFHDQFNKFGLIRNYTSIILIYGVLKF--N 259
           CG  +S +  L ++ I  C    N+Y+Y  +    +NK    + +   I  Y +L F  N
Sbjct: 194 CGDWYSYIKILRKYDIAFCNQPLNYYRYHSQISRAYNKKDKNKRFIQYIEHYIILNFVSN 253

Query: 258 TFNSLTLIKISLF 220
            F   +  K S++
Sbjct: 254 NFQMTSEKKESMY 266


>UniRef50_A0P063 Cluster: Transcriptional regulator, LacI family
           protein; n=1; Stappia aggregata IAM 12614|Rep:
           Transcriptional regulator, LacI family protein - Stappia
           aggregata IAM 12614
          Length = 367

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 114 AGYKHAHIYFGFNKPPDCTYCAIALLPKGAH 206
           +GY+H H     + PPD  +CA  L+  G +
Sbjct: 246 SGYEHTHALLDLDTPPDAIFCANDLMALGCY 276


>UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1;
           Guillardia theta|Rep: DNA-directed RNA polymerase -
           Guillardia theta (Cryptomonas phi)
          Length = 1109

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
 Frame = -3

Query: 441 HSKCG*LHSLLNNLTQHTILLCTS---RFNFYKY*RRFHDQFNKFGLIRNYTSIILIYG- 274
           H+  G L  +LN+LT  +I    +   R NF KY ++    F++    +N TSIIL+ G 
Sbjct: 470 HTPDGSLCGILNHLTISSITSVVNPIERINFLKYFKKHKTIFDRLS-FKNRTSIILLDGK 528

Query: 273 VLKFNT 256
           ++ F+T
Sbjct: 529 IIGFST 534


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,121,739
Number of Sequences: 1657284
Number of extensions: 7826863
Number of successful extensions: 13144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13144
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)