Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    27   1.7  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   5.2  

>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 336 ETAFNTCKN*TAKCKVVSCVVLGYLKENVTNHIYCG 443
           E A   CK    K  +   +V GY   N+ N+  CG
Sbjct: 279 EEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCG 314


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +2

Query: 38  LARSYSSLLIIPYLKNVDKSVESRRS 115
           L +S S++LI+PYLK+  K++E+  S
Sbjct: 559 LKKSSSNILIMPYLKDY-KTIENESS 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,964
Number of Sequences: 5004
Number of extensions: 36326
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)