Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        29   2.3  
SB_49059| Best HMM Match : UPF0175 (HMM E-Value=5.9)                   27   9.4  

>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -1

Query: 206 VSSFRK*RDRTVGTVGRFVKSEINMCMFISRFVVIQRTCLRFSNRELLKVTNSFELIYVR 27
           V  F+K +D  VG +GR++  E        RF    + C+ +   ++L      ++I V 
Sbjct: 235 VPDFKKGKDGVVGQLGRWLSVEKANQALGERFPGCMKACIGYDVYQVLTDVVKPKIIVVA 294

Query: 26  YKSKSFTE 3
           Y+S    E
Sbjct: 295 YESLKIKE 302


>SB_49059| Best HMM Match : UPF0175 (HMM E-Value=5.9)
          Length = 159

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 393 VVLGYLKENVTNHIYCGFLIKQSSDRYRR 479
           V+L  L      H+YCG  ++ S +R R+
Sbjct: 5   VILAKLNRETQAHVYCGTTLRSSLNRARK 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,372
Number of Sequences: 59808
Number of extensions: 245285
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)