Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    31   0.66 
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    31   0.66 
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    28   3.5  
L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte upt...    28   3.5  
AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.      28   3.5  

>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 37  ISSKLFVTFNNSLFEKRRQVR*ITTKRDINMHIFISDLTNRPT-VPTVRSRYFLKELTSQ 213
           +S + FV  +  L  K RQV  ++ KRDIN   F+ +   R      +  RY   EL   
Sbjct: 152 LSDEAFVFLHMLLSLKYRQVVVLSVKRDINADQFVEEFEKRRVEFKIIVQRYIEVELNEN 211

Query: 214 ANE 222
            N+
Sbjct: 212 LND 214


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 37  ISSKLFVTFNNSLFEKRRQVR*ITTKRDINMHIFISDLTNRPT-VPTVRSRYFLKELTSQ 213
           +S + FV  +  L  K RQV  ++ KRDIN   F+ +   R      +  RY   EL   
Sbjct: 152 LSDEAFVFLHMLLSLKYRQVVVLSVKRDINADQFVEEFEKRRVEFKIIVQRYIEVELNEN 211

Query: 214 ANE 222
            N+
Sbjct: 212 LND 214


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 470 PIGRLLY*EATVN-VVSYILF*IT*HNTRYYFALRGLIFTSIKGGFM 333
           P GRL Y    V+ VV +    +  H T YY AL    +TSI   F+
Sbjct: 591 PFGRLSYCAYIVHWVVLFWFLNVGGHATHYYSALEVFTYTSIPATFL 637


>L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte uptake
           defective protein4 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 358 LQVLKAVS*SVQ*IWLDQKLHKYNTDLRSIEV*YV*LVNTN*NLTFRSPVT*APLGS 188
           LQ L A+  ++   W +QK+ +  +D +   V    L  TN N+T  +P+T   LGS
Sbjct: 207 LQNLYAIPPTLSFGWEEQKMKRIISDFKIQNVSSSALYYTNGNITSSAPITGFDLGS 263


>AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 358 LQVLKAVS*SVQ*IWLDQKLHKYNTDLRSIEV*YV*LVNTN*NLTFRSPVT*APLGS 188
           LQ L A+  ++   W +QK+ +  +D +   V    L  TN N+T  +P+T   LGS
Sbjct: 207 LQNLYAIPPTLSFGWEEQKMKRIISDFKIQNVSSSALYYTNGNITSSAPITGFDLGS 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,554,277
Number of Sequences: 27780
Number of extensions: 197513
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)