Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi...    28   4.4  
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    27   7.7  
At3g55320.1 68416.m06144 ABC transporter family protein similar ...    27   7.7  
At2g39480.1 68415.m04845 ABC transporter family protein related ...    27   7.7  

>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 411 LNNLTQHTILLCTSRFNFYKY*RRFHDQFNKFGLIRN---YTSIILIY 277
           L+N+T  TI+ C  R N Y     + ++  K GL+ +   Y++I+ +Y
Sbjct: 219 LDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVY 266


>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 658

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 510 INKLF*MRNFSGDTYRKTALLGSHSKCG 427
           ++ L   R FSG+T+    L+  +SKCG
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCG 406


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 268 QYSVDQYYTCVISDQAKFIELIMKPPLIL 354
           +Y +D YY C   D A  +  + KPP +L
Sbjct: 283 EYLMDYYYYCSSCDFAMNVSCLEKPPPVL 311


>At3g55320.1 68416.m06144 ABC transporter family protein similar to
           multidrug resistant P-glycoprotein pmdr1 GI:4204793 from
           [Solanum tuberosum]
          Length = 1408

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 375 CKVVSCVVLGYLKENVTNHIYCGFLIKQSSDRYRR*SFA 491
           C +++C+ +  +  N   H Y G + ++ ++R RR  F+
Sbjct: 880 CLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFS 918


>At2g39480.1 68415.m04845 ABC transporter family protein related to
           multi drug resistance proteins and P-glycoproteins
          Length = 1407

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 375 CKVVSCVVLGYLKENVTNHIYCGFLIKQSSDRYRR*SFA 491
           C +++C+ +  +  N   H Y G + ++ ++R RR  F+
Sbjct: 879 CLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFS 917


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,609,424
Number of Sequences: 28952
Number of extensions: 171206
Number of successful extensions: 283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)