Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303H02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 113 1e-25
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 105 3e-23
02_02_0470 - 10700092-10700505 30 1.3
10_08_0951 - 21769342-21769752 29 3.0
01_05_0760 - 24977608-24978708 29 3.0
10_02_0100 + 5296783-5297568 28 4.0
08_01_0897 - 8839134-8839718 28 4.0
06_01_0767 + 5732573-5732670,5733223-5733278,5733928-5734007,573... 28 4.0
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 4.0
10_08_0103 + 14818893-14819082,14819878-14819934,14820948-148210... 28 5.2
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 5.2
12_02_0371 - 18187169-18188386 27 6.9
10_02_0125 - 5537541-5538758 27 6.9
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 27 9.1
02_05_0398 - 28644632-28644889,28644997-28645032,28645101-286453... 27 9.1
01_04_0020 + 15142402-15143421 27 9.1
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 113 bits (271), Expect = 1e-25
Identities = 73/158 (46%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Frame = -3
Query: 513 IRPXLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRXIPQRYVIGTST 334
+R + GTV ILLAGR GKRVV + L SGLLLVTGPF N P+R + Q YVI TST
Sbjct: 94 MRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATST 153
Query: 333 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKE--KYVPSEQRKTDQKTV 160
++ + + K F+D YF EG ++F T+KE K +P E +K DQK V
Sbjct: 154 KVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-ELFETEKEATKNLP-EFKKEDQKVV 207
Query: 159 DEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 46
D +IKAI A PD L+ YL A F LR PH + F
Sbjct: 208 DAELIKAIEAVPD---LKTYLGARFSLRDGDKPHEMVF 242
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 105 bits (251), Expect = 3e-23
Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Frame = -3
Query: 516 RIRPXLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRXIPQRYVIGTS 337
++R + GTV ILLAGR+ GKRVV + L SGLLL+TGPF N P+R + Q YVI TS
Sbjct: 70 KLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATS 129
Query: 336 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKE--KYVPSEQRKTDQKT 163
T++ + K+ K F+D YF EG ++F T+KE K +P + +K DQK
Sbjct: 130 TKVDISGVKVDK-FDDKYF---ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKA 183
Query: 162 VDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYP 61
VD +IKAI PD LK+ G R+S++P
Sbjct: 184 VDAELIKAIEVVPD-------LKSYLGARNSRWP 210
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 501 LKIGTVCILLAGRHAGKRVVLVGILPSG 418
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 501 LKIGTVCILLAGRHAGKRVVLVGILPSG 418
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>01_05_0760 - 24977608-24978708
Length = 366
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -1
Query: 197 FHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARANIPIGCASKS*N 33
+H +S+ + R+ + + P+ P RR SA + P+D+ R + + K N
Sbjct: 222 YHTNSSSSLARKGHK--NAPARRPPARRASARITSDPADAFRPVVSVAATKKQHN 274
>10_02_0100 + 5296783-5297568
Length = 261
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 158 TRL*SKPSEPDPTRRCSADTSKRPSDSARANIP 60
TR SKP P PT+ SA + +D A A+ P
Sbjct: 142 TRSSSKPPAPAPTKTASASDHAKKTDMAAAHKP 174
>08_01_0897 - 8839134-8839718
Length = 194
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 77 RSPKAALRYPRSTFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSP 235
R+ +AA+R +T S + AL A S S+L C DG S F SSP
Sbjct: 22 RAARAAVRIAATTTASSPSSPALAAALSRTP-SLLDCMDGDDDSIFYTPASSP 73
>06_01_0767 +
5732573-5732670,5733223-5733278,5733928-5734007,
5735334-5735372,5735563-5735950,5736049-5737562
Length = 724
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 142 SHRSPTRQEGAPRIPQSGLR 83
SHR P QEGAP P S +R
Sbjct: 157 SHRWPEAQEGAPAFPPSTMR 176
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 206 RNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAN 66
+NT LS+AK + +S ++ KPS + + +KR SD+ R +
Sbjct: 639 KNTRKLSNAKESKDESPQVEPKPSSANDCDNPISQVAKRASDNIRGH 685
>10_08_0103 +
14818893-14819082,14819878-14819934,14820948-14821056,
14821137-14821362,14821521-14821637,14821735-14821893
Length = 285
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -1
Query: 266 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSK 93
S SN+QSN T K+R F +A+ + R S+R +P D A TSK
Sbjct: 212 SDSNIQSNKSAEHTGTTVKRRERFRCVNARIVLRTSSR--RRPIGVDFWDEYFASTSK 267
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 365 FLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 243
FL+ + PP + H C N S++I R + N QSN
Sbjct: 545 FLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>12_02_0371 - 18187169-18188386
Length = 405
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 218 PQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRC 111
PQ KRN H S RRQ TRL + P R C
Sbjct: 365 PQPKRNLRHHSGHYARRRQVTRLVVTGANAVPVRPC 400
>10_02_0125 - 5537541-5538758
Length = 405
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 218 PQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRC 111
PQ KRN H S RRQ TRL + P R C
Sbjct: 365 PQPKRNLRHHSGHYARRRQVTRLVVTGANAIPVRPC 400
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = -1
Query: 356 AM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKR---VMTSLPQK---KRNTF 195
A+ S+P S +N+S +S R+ASN N+ R V +S+ +K + ++
Sbjct: 135 AVKSSPISTLKKVPSLTENSSSSASSSFRRAASNATLNSPRSPSVTSSVTKKVGSRTSSM 194
Query: 194 HLSSAKPIRRQSTRL*SKPS 135
S+ PIR++S+ S+ S
Sbjct: 195 DKGSSMPIRKKSSTADSRDS 214
>02_05_0398 -
28644632-28644889,28644997-28645032,28645101-28645364,
28645439-28645522,28645718-28645798,28645888-28645965,
28646571-28646672,28646754-28646849,28646955-28647161,
28647246-28647493,28647577-28647773,28647997-28648112
Length = 588
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -1
Query: 311 NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSE 132
NC N + ++SR ++ Q ++K +TSLPQ+K+ S + +QS + KP+
Sbjct: 328 NCINQAPSLSSRNKKTLLQSQPSSK--VTSLPQQKQK--FRSPHLELHKQSEKS-KKPTS 382
Query: 131 PDP 123
+P
Sbjct: 383 SEP 385
>01_04_0020 + 15142402-15143421
Length = 339
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 219 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARP 124
ATK+ +YVP + +D+K +++V + A P
Sbjct: 201 ATKQGQYVPMYAQDSDEKATEKSVSSPVTAYP 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,877
Number of Sequences: 37544
Number of extensions: 290853
Number of successful extensions: 911
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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