Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               84   8e-17
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.0  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         30   1.0  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   5.4  
SB_40998| Best HMM Match : Ion_trans_2 (HMM E-Value=2.2e-15)           27   7.1  
SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)                   27   7.1  
SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   7.1  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                 27   9.4  
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                27   9.4  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
 Frame = -3

Query: 399 PFAFNSCPLRXIPQRYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXKEGDDI 223
           PF  N  PLR IPQ YVI TST I + + KLP+H F D+ +             K  +D+
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESY-----FKGEPKKKKRSEDM 56

Query: 222 FATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 46
           F    E+  PSEQR  DQK VD+ ++  I A P+   ++ YL + F LR  Q+PH + F
Sbjct: 57  FEEAAEEKKPSEQRIADQKAVDDQILPKISAVPN---MKKYLSSLFSLRKGQFPHDMVF 112


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -1

Query: 305  QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPD 126
            + T ++ T++ +   S+     +R   S     R   H    KP  R++T   SKP+EPD
Sbjct: 966  RQTPLVDTTKAVGPLSSTSETRRRQSDSDSVLSRRLDH---TKPPLRKTTSNDSKPTEPD 1022

Query: 125  PTRRCSADTSKRPSDSA 75
             +RR     S   S +A
Sbjct: 1023 SSRRTYRAASMDASTTA 1039


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 205 EIRSI*AAQNRSEDSRRGCDQSHRSPTRQEGAPRIPQSGLRTPL 74
           E++     Q + +   +G ++ H     QEG  ++PQ G +TP+
Sbjct: 657 EVQGQEQGQGQDQSHVQGQEEGHSQDQGQEGTNQVPQQGEKTPI 700


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 133 SPTRQEGAPRIPQSGLRTPLEPISPSAALL 44
           SPT + G P +P S   T   P+ P +++L
Sbjct: 299 SPTTENGTPDVPHSSFPTTGIPVIPQSSVL 328


>SB_40998| Best HMM Match : Ion_trans_2 (HMM E-Value=2.2e-15)
          Length = 355

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 170 RRQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 72
           R ++T L +   +PD    CS+  SK+PSD  R
Sbjct: 177 RNRTTDLGAPVQKPDAISGCSSTLSKKPSDFDR 209


>SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)
          Length = 514

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 142 SHRSPTRQEGAPRIPQSGLRTPLEPISPSAALLNLRIRNKIFD 14
           +HR  TRQ     +P   + T L P   +   L+ R+ NKI D
Sbjct: 217 AHRPRTRQRLKSTVPNELISTLLFPNIQTRKTLDTRMSNKIID 259


>SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 170 RRQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 72
           R ++T L +   +PD    CS+  SK+PSD  R
Sbjct: 340 RNRTTDLGAPVQKPDAISGCSSTLSKKPSDFDR 372


>SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
 Frame = +2

Query: 2   FFFLVKYFISYSKI*KRSR--------WGYWLERSPKAALRYPRSTFLSGRAPMALITAS 157
           FFF+V++  SYS + KRSR        WG  L  S    L + R  ++ G++   +   S
Sbjct: 115 FFFIVRWR-SYSSLFKRSRVVIYISIDWGISLLLSSPPLLGWARFDYIPGKSYCFVFWPS 173

Query: 158 STVF*SVLRCSDGTYFSFFVAKMSSPSLRLTVRLTHFLFFLK 283
             +F          YF  FV     P + + V  T  L F +
Sbjct: 174 DVLF---------MYFMIFVC-FCGPLVTMAVCYTKILLFTR 205


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 481 HSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPATXYS 362
           HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 93  HSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 407

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 204 KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLK 94
           + VP E+ + + K ++E VIK I A+ +  V R  L+
Sbjct: 303 RLVPKERLEREPKVMEEPVIKEIAAKHNCSVARVLLR 339


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -1

Query: 320 ATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SK 141
           AT+NC+  +  +   +  +A    +N +R    LP+ +R T    +    RR + +L   
Sbjct: 118 ATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAE-GTTNNCRRHNEQL--- 173

Query: 140 PSEPDPTRRCSADTSKRPSDS-ARANIPIG 54
           P     T   + +  +R ++   +A +P G
Sbjct: 174 PKAQRTTAEGTTNNCRRHNEQLPKAYLPSG 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,962,393
Number of Sequences: 59808
Number of extensions: 321364
Number of successful extensions: 1124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)