Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303H02f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 140 7e-34
U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical pr... 29 1.5
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 29 1.5
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 29 1.5
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 29 2.0
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 29 2.0
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 29 2.0
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 29 2.0
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 29 2.0
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 28 3.5
AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like se... 27 6.2
AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical... 27 6.2
Z70286-1|CAA94294.2| 194|Caenorhabditis elegans Hypothetical pr... 27 8.1
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 27 8.1
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 27 8.1
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 140 bits (338), Expect = 7e-34
Identities = 75/157 (47%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Frame = -3
Query: 513 IRPXLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRXIPQRYVIGTS 337
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLR I Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 336 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVD 157
++++ K+P+H ND+YF G +IFA+ K +Y SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVD 180
Query: 156 EAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 46
++ AI P+ K L GYL F L +QYPH+++F
Sbjct: 181 APILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
>U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical
protein T27F7.2c protein.
Length = 331
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 266 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRP 87
S+S N KR+ T PQ L +R ++ P EP PT C+A T+
Sbjct: 58 SSSTSSVNPKRMSTIEPQAPTREQLLQLQNQMRCAASS--PVPEEPRPTDLCAASTTTST 115
Query: 86 SDSARANIPIGCASKS 39
S A ++ G +S +
Sbjct: 116 SSVASSSSSNGSSSST 131
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 266 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRP 87
S+S N KR+ T PQ L +R ++ P EP PT C+A T+
Sbjct: 427 SSSTSSVNPKRMSTIEPQAPTREQLLQLQNQMRCAASS--PVPEEPRPTDLCAASTTTST 484
Query: 86 SDSARANIPIGCASKS 39
S A ++ G +S +
Sbjct: 485 SSVASSSSSNGSSSST 500
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 266 SASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRP 87
S+S N KR+ T PQ L +R ++ P EP PT C+A T+
Sbjct: 437 SSSTSSVNPKRMSTIEPQAPTREQLLQLQNQMRCAASS--PVPEEPRPTDLCAASTTTST 494
Query: 86 SDSARANIPIGCASKS 39
S A ++ G +S +
Sbjct: 495 SSVASSSSSNGSSSST 510
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = -1
Query: 341 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 168
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 167 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 72
+ +L S+ S + S+ P D +
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 589
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = -1
Query: 341 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 168
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 573 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 632
Query: 167 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 72
+ +L S+ S + S+ P D +
Sbjct: 633 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 664
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = -1
Query: 341 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 168
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 507 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 566
Query: 167 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 72
+ +L S+ S + S+ P D +
Sbjct: 567 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 598
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = -1
Query: 341 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 168
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 651 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 710
Query: 167 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 72
+ +L S+ S + S+ P D +
Sbjct: 711 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 742
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = -1
Query: 341 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 168
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 167 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 72
+ +L S+ S + S+ P D +
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 589
>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
protein F31B12.2 protein.
Length = 1089
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 269 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPS 135
RSA +V+ +V+ + + R + HLS+++PI +S S P+
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408
>AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like
serine/threonine kinase protein.
Length = 596
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -1
Query: 323 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*S 144
+ +N TS ++ SA+N + T+ Q TF+ + I ST S
Sbjct: 7 AGNTNTTTTSSAASAAAAHSAANASTITSEYSTT--QTTTGTFNTDTLSSIGSTSTLHGS 64
Query: 143 KPSEPDP 123
+PS+P P
Sbjct: 65 QPSQPPP 71
>AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical
protein Y59A8B.23 protein.
Length = 596
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -1
Query: 323 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*S 144
+ +N TS ++ SA+N + T+ Q TF+ + I ST S
Sbjct: 7 AGNTNTTTTSSAASAAAAHSAANASTITSEYSTT--QTTTGTFNTDTLSSIGSTSTLHGS 64
Query: 143 KPSEPDP 123
+PS+P P
Sbjct: 65 QPSQPPP 71
>Z70286-1|CAA94294.2| 194|Caenorhabditis elegans Hypothetical
protein K08C7.4 protein.
Length = 194
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -3
Query: 228 DIFATKKEKYVPSEQRKTDQ-KTVDEAVIKAIGARP-DKK 115
D TK E VPSE KT++ ++V+E ++ +P DKK
Sbjct: 15 DADITKPELVVPSEDPKTEEIESVEEKTVEKSTEKPVDKK 54
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 254 VQSNAKRVMTSLPQKKRNTFHLSSAK 177
+ +NA R+MT LP N HLS+A+
Sbjct: 1888 LSANACRIMTQLPINPSNIEHLSTAE 1913
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 254 VQSNAKRVMTSLPQKKRNTFHLSSAK 177
+ +NA R+MT LP N HLS+A+
Sbjct: 1824 LSANACRIMTQLPINPSNIEHLSTAE 1849
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,758,207
Number of Sequences: 27780
Number of extensions: 238285
Number of successful extensions: 753
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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