Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303H02f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 119 1e-27
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 119 1e-27
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 119 1e-27
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi... 33 0.088
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 32 0.20
At3g10440.1 68416.m01252 hypothetical protein 31 0.47
At5g08320.1 68418.m00979 expressed protein predicted proteins, H... 29 2.5
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf... 28 3.3
At3g05050.1 68416.m00548 protein kinase family protein contains ... 28 3.3
At3g08670.1 68416.m01007 expressed protein 27 5.8
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 27 5.8
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 119 bits (287), Expect = 1e-27
Identities = 72/157 (45%), Positives = 90/157 (57%)
Frame = -3
Query: 516 RIRPXLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRXIPQRYVIGTS 337
++R + GTV I+LAGR GKRVV + L SGLLLVTGPF N PLR + Q YVIGTS
Sbjct: 84 KLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTS 143
Query: 336 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVD 157
T++ + L K F+D YF EG+ A K+EK + +K DQK VD
Sbjct: 144 TKVDISGVTLDK-FDDKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVD 199
Query: 156 EAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 46
A+IKAI A P+ L+ YL A F L+ PH L F
Sbjct: 200 AALIKAIEAVPE---LKTYLGARFSLKQGMKPHELVF 233
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 119 bits (287), Expect = 1e-27
Identities = 72/157 (45%), Positives = 90/157 (57%)
Frame = -3
Query: 516 RIRPXLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRXIPQRYVIGTS 337
++R + GTV I+LAGR GKRVV + L SGLLLVTGPF N PLR + Q YVIGTS
Sbjct: 84 KLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTS 143
Query: 336 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVD 157
T++ + L K F+D YF EG+ A K+EK + +K DQK VD
Sbjct: 144 TKVDISGVTLDK-FDDKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVD 199
Query: 156 EAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 46
A+IKAI A P+ L+ YL A F L+ PH L F
Sbjct: 200 AALIKAIEAVPE---LKTYLGARFSLKQGMKPHELVF 233
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 119 bits (287), Expect = 1e-27
Identities = 72/157 (45%), Positives = 90/157 (57%)
Frame = -3
Query: 516 RIRPXLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRXIPQRYVIGTS 337
+++ + GTV I+LAGR GKRVV + L SGLLLVTGPF N PLR + Q YVIGTS
Sbjct: 84 KLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTS 143
Query: 336 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVD 157
T+I + K F+D YF EG+ A K+EK +++K DQKTVD
Sbjct: 144 TKIDISGVNTEK-FDDKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVD 199
Query: 156 EAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 46
A+IK+I A P+ KV YL A F L PH L F
Sbjct: 200 AALIKSIEAVPELKV---YLGARFSLSQGMKPHELVF 233
>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 530
Score = 33.5 bits (73), Expect = 0.088
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = -1
Query: 269 RSASNVQSNAKRVMTS---LPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADT 99
R+ N+ S + +T+ LP+K +T S++P + S + KP + R S+++
Sbjct: 41 RAKDNLSSKSSTTVTNPKILPRKSTDT----SSQPKKSDSQKPQQKPKPDENHPRKSSES 96
Query: 98 SKRPSDSARANIPIGCASKS*NKK 27
+++ SDSAR +I G +S++ +K+
Sbjct: 97 ARKSSDSARKSISSG-SSRTESKR 119
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
thaliana}
Length = 1473
Score = 32.3 bits (70), Expect = 0.20
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -3
Query: 219 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRL 52
ATK K P+ RK ++TV + AIG P+KKV R + F +SS RL
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV-RKMRSSPFNKKSSSVMSRL 1407
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 31.1 bits (67), Expect = 0.47
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = -1
Query: 323 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS-----LPQKKRNTFHLSSAK-PIRRQ 162
S++S + S T +++ A ++ +A+ +T Q+ + L ++ P+RR+
Sbjct: 256 SSSSKTREASQTETLQKVVDAKEIKGDARFSLTKHSDWLKSQEPEPSESLYESRFPLRRR 315
Query: 161 STRL*SKPSEPDPTRRCSADTSKRPSDSARA 69
S RL S+ EP + S +T+KR + R+
Sbjct: 316 SARLKSQEPEPSESFHDSIETTKRRRSAIRS 346
>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
sapiens and Caenorhabditis elegans
Length = 150
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 340 GADHIALRNTA*RARIESKRSSN*KQTAGQNSNKYNPLACMSTSEE 477
G D + +NT + +R S ++T ++S K NP+ C + S E
Sbjct: 85 GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130
>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 417
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 148 DQSHRSPTRQEGAPRIPQSGLRTPLEPISPSAAL 47
D S S + Q+ PRI SG TP +P+SP + +
Sbjct: 78 DGSKNSSSDQQTLPRISISGKNTP-DPVSPDSVI 110
>At3g05050.1 68416.m00548 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 593
Score = 28.3 bits (60), Expect = 3.3
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -1
Query: 317 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 138
T ++TS ++ + SASN + + + QKK N F ++ AK + + R SKP
Sbjct: 40 TETTESTSAVV----VASASNGEE-VRNHEDVVDQKKENGFVVTEAKERKSKGERKRSKP 94
Query: 137 SEPDPTR 117
PDP R
Sbjct: 95 --PDPRR 99
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 110 STFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSPS 238
S+F SGR+P +++ SS S +R S + S A+ S+P+
Sbjct: 168 SSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPT 210
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -1
Query: 347 SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 168
S PP +S Q + + T + AS ++K MTS Q ++N F + S +
Sbjct: 1082 SWPPAAGYSFVCWFQFRNFLTTQGKESEASKAGGSSKTRMTSAQQHEQNIFRMFSVGAVS 1141
Query: 167 RQS 159
+S
Sbjct: 1142 NES 1144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,173,729
Number of Sequences: 28952
Number of extensions: 221535
Number of successful extensions: 702
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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