Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   5.4  
SB_56444| Best HMM Match : fn3 (HMM E-Value=1.2e-21)                   27   9.4  

>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +1

Query: 193 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 312
           PA ++EGEG+P+  +R+ Q  +  ++Q K    + +K ++
Sbjct: 56  PANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKS 95


>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 337

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 394 RGAFLLRHEKPCAWPASL*GV 332
           RGA L R+E PC W A L G+
Sbjct: 69  RGAALQRNEPPCMWIAILNGI 89


>SB_56444| Best HMM Match : fn3 (HMM E-Value=1.2e-21)
          Length = 651

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 125 LVVYRVSHG*KSVTQSLGTGSWTGSTATLECGVRAS 18
           LV++R S   + +  +  T SW G   +L+C  R S
Sbjct: 336 LVLFRSSDKPEMLDSTQNTSSWNGRLLSLQCTARGS 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,586,305
Number of Sequences: 59808
Number of extensions: 183400
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)