Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23930.1 68416.m03006 expressed protein                             32   0.27 
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    29   1.4  
At3g43160.1 68416.m04554 expressed protein merozoite surface pro...    28   4.4  
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    27   7.7  
At3g61350.1 68416.m06865 SKP1 interacting partner 4 (SKIP4) almo...    27   7.7  

>At3g23930.1 68416.m03006 expressed protein
          Length = 224

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 202 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQR 309
           K +  G    IK +D++   +  QLKE   EWRK+R
Sbjct: 21  KDQSRGRRHLIKERDEREKVMFLQLKEAEREWRKER 56


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 199 PKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEW 297
           PK+E EG+ E +  + +K     +++KE  +EW
Sbjct: 232 PKKENEGEVEEVDEEKEKDGKKKKKIKEVSHEW 264


>At3g43160.1 68416.m04554 expressed protein merozoite surface
           protein 2 (MSP-2), EMBL:PFU72951, Plasmodium falciparum
          Length = 295

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 230 SSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSR 352
           +S+ +TRSGR +++    +ST   NS  R   SS   K  R
Sbjct: 103 NSTTRTRSGRGFIDYVLESSTGTENSSTRTAESSTRTKNGR 143


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 196 APKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWR 300
           +PK   E +PE  K  D+K    +E   E+I+ W+
Sbjct: 182 SPKDSDESEPEVEKVGDKKSDPKEEVPVEWISLWK 216


>At3g61350.1 68416.m06865 SKP1 interacting partner 4 (SKIP4) almost
           idential to SKP1 interacting partner 4 GI:10716953 from
           [Arabidopsis thaliana], 42 aa extension at N-terminal;
           contains Pfam profiles PF01344: Kelch motif, PF00646:
           F-box domain
          Length = 358

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 145 IPPRQTCWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 32
           +PP  T   +  C T   + ++   L L P A+R W++
Sbjct: 154 VPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWDI 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,928,021
Number of Sequences: 28952
Number of extensions: 124473
Number of successful extensions: 331
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)