Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303G12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 27 2.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 2.2
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 26 3.9
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 26 3.9
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.2
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 25 5.2
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 5.2
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.8
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 6.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 6.8
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 25 6.8
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 6.8
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 25 6.8
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.0
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 9.0
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.0
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 9.0
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 9.0
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 275 RRLHTTLCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYLPGSNS 406
R++HT + + + L N + S++ ++YLPGS++
Sbjct: 177 RKIHTNTSSNGTSRRVSGLGSFMAQNSSETSSNRTSAYLPGSST 220
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 293 LCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYLP 394
L A +++ PW+ + GH S+ KNT+ P
Sbjct: 360 LLRGAQLRNTPWVYGIVVFTGHESKLMKNTTETP 393
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 175 DEEDSIPDVGVEEDSDELALDQEETRNLRPRAYT 276
D++ S+P G+ ED+D L+L + + + R +++
Sbjct: 434 DDKPSLPPRGLSEDNDSLSLQKTGSSDTRRSSFS 467
>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 226 VHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLS 110
+H+CLPPL R + K +P + NS PLS
Sbjct: 58 IHKCLPPLQRN-NTIRKRKRNPFLADRPYCINSEDMPLS 95
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 157 GVAMASDEEDSIPDVGVEEDSDELALDQEE 246
G A+A + D D+ VEED D++ E
Sbjct: 336 GEALALENYDGFSDLDVEEDEDDVESSSNE 365
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 238 DPEPVHRCLPPLPRQVYCLLHPKPSPLRPAK 146
D + + +P PRQ+ +L KP P + K
Sbjct: 1348 DSDKFYLTIPDFPRQINGILEGKPLPTKSTK 1378
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 353 GHNSRSSKNTSYLPGSNSKFTSKNLERP--SELSRESLK 463
G+ + K L SN TSK+++RP SEL +E L+
Sbjct: 53 GNFASLEKQMKKLQLSNDASTSKSIDRPPISELEKEKLE 91
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 202 GVEEDSDEL-ALDQEETRNLRPRAYTPTAYNALPSGFRPT 318
G+EE + L +L QEE +LR ++ Y+ L + P+
Sbjct: 398 GIEEQDEFLQSLSQEEIDDLRAMVHSDHIYSRLTNSLAPS 437
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 308 SVQHLPWLNWLGTNNGHNSRSSKNTSYLPGSNSKFTS 418
++ H+P+ GTN + S + +P ++KF+S
Sbjct: 117 TINHVPYYGSAGTNALNGGPLSNSRKLIPKRSAKFSS 153
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 356 HNSRSSKNTSYLPGSNSKFTSKNLERPSELSRESLKSK 469
+NS+S+ ++ P + K++++ SELS SL S+
Sbjct: 256 NNSKSAPKGTHKPNHSENAELKDIKQSSELSDLSLSSQ 293
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 143 HFCWSEWRWLRMKKTVYLTWEW 208
HF SEWRW + + ++L +++
Sbjct: 978 HFLISEWRWEDVAQILFLIFDF 999
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 160 VAMASDEEDSIPDVGVEEDSDELALDQEE 246
VA DEE+ P G EED DEL + E
Sbjct: 198 VASDKDEEEK-PWSGDEEDDDELVVKDSE 225
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 205 LPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNT 74
L R V L H P +RP + + NST +K + NY T
Sbjct: 261 LTRSVSLLQHKTPRRIRPKSLSKSNSTPLKHLSAQKPN-SNYYT 303
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 338 LGTNNGHNSRSSKNTSYLPGSNSKFTSKNLERPSELSR 451
LG H SRS +T Y+ T + +P E SR
Sbjct: 87 LGFPKTHVSRSKSDTYYMNNKTCLRTHTSAHQPEEFSR 124
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/65 (30%), Positives = 26/65 (40%)
Frame = -2
Query: 253 SLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNT 74
SL P P H LPP+P V P RP+ + S S LS + + + N
Sbjct: 360 SLTPLSSRPAHTSLPPIP-TVQTTSSNVPPVNRPSLKSKSPSVSNILS-NQLSPISSANN 417
Query: 73 DFCIR 59
D R
Sbjct: 418 DVMAR 422
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 181 LHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFCIR 59
L SP RP+ L +N++ P S T NY DF +R
Sbjct: 506 LRKSRSPKRPSSSLSQNASRLPRSLTPGNLEPNY--DFGVR 544
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = +2
Query: 326 WLNWLGTNNGHNSRSSKNT-----SYLPGSNSKFTSKNLERPSELSR---ESLKSKD 472
WLN + NG NS +S +T + LP S+ T+ +++ E+L + D
Sbjct: 236 WLNGTNSTNGTNSTNSTSTTSHSLTKLPTSSKSLTTSKTTASGHITKGVMEALSTND 292
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 244 ETRNLRPRAYTPTAYNALPSGFRPTPSLAE 333
+T L+ PT + LPS + TPS+ E
Sbjct: 510 QTNRLKENEPKPTFFAQLPSKTQETPSITE 539
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 158 PTSKSAKRKLHLISIVTH 105
P+S S RK+H+I ++TH
Sbjct: 777 PSSLSLLRKVHIIPLLTH 794
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,433
Number of Sequences: 5004
Number of extensions: 40605
Number of successful extensions: 171
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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