Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303G12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0322 - 2451062-2451601,2451691-2451792,2452237-2452329,245... 33 0.18
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 31 0.74
03_02_0545 + 9373344-9374963 30 1.3
12_01_1078 - 11202284-11202343,11202941-11203000,11203036-112030... 29 1.7
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 29 1.7
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 2.3
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 29 3.0
07_01_0516 - 3850252-3852870 28 4.0
01_01_0896 + 7060431-7061390,7063562-7064191 28 4.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 5.2
05_03_0458 + 14280953-14281866,14281964-14282912 28 5.2
04_03_0799 - 19805190-19805749,19806316-19806403 28 5.2
03_05_0543 - 25404630-25405408,25405461-25405605 28 5.2
11_01_0359 - 2731522-2732346 27 6.9
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 27 6.9
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 27 6.9
11_06_0510 + 24420402-24422582 27 9.1
06_03_1057 + 27248249-27249001 27 9.1
06_03_0986 - 26574083-26574952 27 9.1
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 27 9.1
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 27 9.1
>12_01_0322 -
2451062-2451601,2451691-2451792,2452237-2452329,
2452443-2452589,2453063-2453150,2453338-2453426,
2453698-2453763,2453962-2454076,2454269-2454462
Length = 477
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 193 PDVGVEEDSD-ELALDQEETRNLRPRAYTPTAYNALPSGFRPTPSL 327
P +G +D EL + E NL PRA TP+ LP+ PTP+L
Sbjct: 416 PRIGCVKDYPMELRMQALEMVNLSPRASTPSPSWRLPACLSPTPNL 461
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 30.7 bits (66), Expect = 0.74
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 328 PGKVLDGSRWAERCMQSACKHADEDSLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPL 158
P +V +R + + C+ +D +L PP P+ PPLP + P P+P+
Sbjct: 1088 PSEVEASTRCRPEQIDTKCRTSDRHTLGPPLPDDRPPSPPPLPSSPPPVPPPPPAPI 1144
>03_02_0545 + 9373344-9374963
Length = 539
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = -2
Query: 268 HADEDSLFPPDPEPVHRCL---PPLPRQVYCLLHPKPSPLRPA 149
H D D PP P P RCL P + L PSP PA
Sbjct: 34 HDDFDLFLPPPPGPFRRCLHAAAAAPPDINLPLDADPSPPPPA 76
>12_01_1078 -
11202284-11202343,11202941-11203000,11203036-11203050,
11203322-11204026
Length = 279
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/60 (26%), Positives = 22/60 (36%)
Frame = -2
Query: 193 VYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFCIRQKAREMTETRQRLPR 14
V C P P PLRP+ + S P S + + +AR + LPR
Sbjct: 40 VRCAHSPSPHPLRPSAATADEEVSLPPSLRVSRLAEEFRVSPDAADRARRLLARAAALPR 99
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -2
Query: 334 VQPGKVLDGSRWAERCMQSACKHADEDSLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLR 155
VQPG +G ++ SA A ++ L PP P P LPP P+ + P P P
Sbjct: 515 VQPGS--NGMLLQDQPHVSAHPSASKNML-PPPPPPPRNMLPPPPKSM-----PPPPPKF 566
Query: 154 PAKVLREN 131
P+ + N
Sbjct: 567 PSNEMSRN 574
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/81 (20%), Positives = 33/81 (40%)
Frame = +2
Query: 149 CWSEWRWLRMKKTVYLTWEWRKTAMNWLWIRRKQGIFVRVLTRRLHTTLCPAASVQHLPW 328
C+ WRW V+ + A+N +WI + RV + HT+ ++ +
Sbjct: 44 CYKLWRWGTQMIKVFSKIKMNALAINVIWIEAQLNCIGRVFLQ--HTSAWAHIGIKRMGE 101
Query: 329 LNWLGTNNGHNSRSSKNTSYL 391
L+ + N +S + + L
Sbjct: 102 LDIIAFKNAVKQKSPEEAAIL 122
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 344 TNNGHNSRSSKNTSYLPGSNSKFTSKNLERPSELSRESLKSKD 472
T+N N+ + + +P KF+ +E+P E S E K+
Sbjct: 82 TDNNDNAVPEEPNNTVPSEEEKFSENTVEKPVESSEEKAPPKE 124
>07_01_0516 - 3850252-3852870
Length = 872
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -2
Query: 280 SACKHADEDSLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLR 155
S A L PP P P R LPP P P P P R
Sbjct: 4 STSSAAPPPRLLPPQPPPTSRPLPPPPPPPPPAHGPSPPPPR 45
>01_01_0896 + 7060431-7061390,7063562-7064191
Length = 529
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 320 LPWLNWLGTNNGHNSRSSKNTSYLPGSNSKFTSKNLERPSELSRE 454
LPWL W+ NG + + L G K + R E+ R+
Sbjct: 236 LPWLGWVDALNGMEVKVQRTFEALDGILEKVIDDHRRRRREVGRQ 280
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -2
Query: 247 FPPDPEPVHRCLPPLPRQVYCLLHPKPSPLRP 152
F P P P PPLP+ Y P P P P
Sbjct: 561 FSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 244 PPDPEPVHRCLPPL-PRQVYCLLHPKPSPLRPAKVLRENSTSFP 116
PP P+ PPL P + C HP P P P+ +++S P
Sbjct: 65 PPPLPPLQPTPPPLPPTTLSCSSHPTPPP-PPSPTTSPSASSLP 107
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = -2
Query: 241 PDPEPVHRCLPPLPRQVY--CLLHPKPSP 161
P P P C PP Q Y C PKP P
Sbjct: 106 PAPPPPPACCPPSTHQCYHCCPAPPKPKP 134
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFC 65
P P P R P PR+ P P+PL PA R + P E ++ K +
Sbjct: 142 PAAPLPGVRTPPSPPRRAPA---PAPAPLTPALSQRFLAERRPAPVPEPVTRKRSDLGTL 198
Query: 64 IRQKAREMTETRQRLP 17
++ K ++ ET + LP
Sbjct: 199 MKPKEDKVEETTKPLP 214
>11_01_0359 - 2731522-2732346
Length = 274
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 268 HADEDSLFPPDPEPVHRCLPPLPRQVYCL 182
HA +PP P P H PP P CL
Sbjct: 58 HAYHHHHYPPPPPPHHHPYPPHPPPPTCL 86
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPA 149
PP P C PPLP P P PL P+
Sbjct: 1147 PPLPSDSPPCQPPLPPSPPPATPPPPPPLSPS 1178
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 154 PAKVLRENSTSFPLSRTEKLSVKNYNTDFCIRQ 56
P + ENS FP +R ++S N NT F + +
Sbjct: 536 PQNAIPENSQGFPDTRAREVSQSNTNTFFDVSE 568
>11_06_0510 + 24420402-24422582
Length = 726
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 152 WSEWRWLRMKKTVYLTWEWR 211
W EWRW KT++ +W ++
Sbjct: 413 WLEWRWNFRVKTMWDSWRYK 432
>06_03_1057 + 27248249-27249001
Length = 250
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 259 RPRAYTPTAYNALPSGFRPTPS 324
RP A PTA +P+G +P PS
Sbjct: 25 RPAATVPTAPAVIPAGSQPAPS 46
>06_03_0986 - 26574083-26574952
Length = 289
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 241 PDPEPVHRCLPPLPRQVYCLLHPKPSPL-RPAKVL 140
P P P+ PPLPR + P P+P+ P K++
Sbjct: 200 PGPGPLPLPSPPLPRMKPMAIAPTPAPVPAPTKMV 234
>04_04_0179 - 23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 262 DEDSLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLR 155
D +S+ PP P+H PLPR+V C L S LR
Sbjct: 1206 DNESVSPP---PLHLEGAPLPREVLCTLPCVGSVLR 1238
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 313 DGSRWAERCMQSACKHADEDSL-FPPDP 233
D RW E M + AD+D++ PP P
Sbjct: 73 DSDRWPEMAMYAGMLQADDDNIEIPPPP 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,836
Number of Sequences: 37544
Number of extensions: 309445
Number of successful extensions: 1435
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -