Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303G12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025) 29 1.8
SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09) 29 2.3
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 28 4.1
SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27) 28 4.1
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_48604| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084) 28 5.4
SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_16147| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2) 27 9.4
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 27 9.4
SB_48092| Best HMM Match : PMG (HMM E-Value=7.6) 27 9.4
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025)
Length = 348
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLLHPKPSPLRPAKV 143
C+Q + + + S P P +R C+ P PR+ Y + +PSP R +V
Sbjct: 220 CVQPSPRRSYRVSCVQPSPRRSYRVSCVQPSPRRCYRVSCVQPSPRRSYRV 270
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLLHPKPSPLRPAKV 143
C+Q + + + S P P +R C+ P PR+ Y + +PSP R +V
Sbjct: 233 CVQPSPRRSYRVSCVQPSPRRCYRVSCVQPSPRRSYRVSCVQPSPRRSYRV 283
>SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09)
Length = 1080
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 178 EEDSIPDVGVEEDSDELALDQEETRNLRPRAYTPTAYNALPSGFRPTP 321
+ED + DVG + D D+ E+ L P T Y SG+R P
Sbjct: 494 DEDYMCDVGFKRDRDDNECYPEDLAVLVPDPCPETTYYMKSSGYRKVP 541
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 230 LWIRRKQGIFVRVLTRRLHTTLCPAASVQHLPWLNWLGTNNGHNSRSSK 376
+WI ++ +F R +TR+ +T ++H W N++ H + K
Sbjct: 1109 MWIIQRNVLFARFVTRKKRSTPALTVRIKHRAW-NFVAATYDHRTGVGK 1156
>SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 344 TNNGHNSRSSKNTSYLPGSNSKFTSKNLERPSELSRESLKSKDHWK 481
TN +SRS YLP + +++ S++L +P + + + H K
Sbjct: 332 TNTVAHSRSEPQAQYLPNTAAQYQSQSLAQPLPNTADKYPIRTHAK 377
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 241 PDPEPVHRCLPPLPRQVYCLLHPKPSPLRPA 149
P PV RCLP LP LL PS +PA
Sbjct: 335 PQLPPVFRCLPQLPPVFPGLLTAPPSISKPA 365
>SB_48604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 347 NNGHNSRSSKNTSYLPGSNSKFTSKN 424
NN +N+ SS N + P +S FT+KN
Sbjct: 31 NNNNNNSSSNNNNNNPKEHSIFTNKN 56
>SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)
Length = 292
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLLHPKPSPLRPAKV 143
C+Q + + + S P P +R C+ P PR+ Y + PSP R +V
Sbjct: 158 CVQPSPRRSYRVSCVQPSPRRSYRVSCVQPSPRRSYRVSCVHPSPRRSYQV 208
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLLHPKPSPLRPAKV 143
C+Q + + + S P P +R C+ P PR+ Y + +PSP R +V
Sbjct: 171 CVQPSPRRSYRVSCVQPSPRRSYRVSCVHPSPRRSYQVSCVQPSPKRCYRV 221
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLLHPKPSPLRPAKV 143
C+ + + + + S P P+ +R C+ P PR Y + +PSP R +V
Sbjct: 197 CVHPSPRRSYQVSCVQPSPKRCYRVSCVQPSPRHSYQVSCVQPSPRRCYRV 247
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 289 CMQSACKHADEDSLFPPDPEPVHR--CLPPLPRQVYCLLHPKPSPLRPAKV 143
C+ + + + S P P +R C+ P PR+ Y + +PSP R +V
Sbjct: 145 CVHPSPRRSYRVSCVQPSPRRSYRVSCVQPSPRRSYRVSCVQPSPRRSYRV 195
>SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 184 DSIPDVGVEEDSDELALDQEETRNLRPRAYTPTAYNALPSGFRPTPS 324
D+ D ++D DE + + + P +P+ P+ R TPS
Sbjct: 332 DNEEDAAADDDDDEEKQGKHDDKTFPPNTASPSTTKTTPTTPRTTPS 378
>SB_16147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 280 SACKHADEDSLFPPDPEPVHRCLP 209
S+C +D+ ++FP + EP+ RC P
Sbjct: 115 SSC--SDDQNVFPHNGEPIRRCFP 136
>SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)
Length = 604
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 208 PLPRQVYCLLHPKPSPLRPAKVLRENSTSF 119
PL QV C+ HP R A+V R + +SF
Sbjct: 41 PLVGQVVCVKHPASGRWRRAEVTRLSQSSF 70
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 277 ACKHADEDSLFPPDPEPVH-RCLPPLPRQVYCLLHPKPSP 161
AC H E P D + +C P RQ+ L HP P P
Sbjct: 286 ACGHMCEKPCHPVDNDHTEFKCRKPCRRQLCDLNHPCPLP 325
>SB_48092| Best HMM Match : PMG (HMM E-Value=7.6)
Length = 294
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 317 HLPWLNWLGTNNGHNSRSSKNTSYLPGSNSKFTSKN 424
H+ WL+ NN +N+ SS N S S+S +S N
Sbjct: 57 HVGWLD--KNNNNNNNSSSSNNSNSNSSSSSSSSSN 90
>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 218 AMNWLWIRRKQGIFVRV-LTRRLHTTLCPAASV 313
A+NW W+ I V V T +HT L P +V
Sbjct: 298 AVNWTWVMENNSIKVLVGNTNGVHTVLNPTGNV 330
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,389
Number of Sequences: 59808
Number of extensions: 331815
Number of successful extensions: 1516
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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