Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    28   3.5  
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    28   4.7  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    28   4.7  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      27   6.2  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    27   6.2  
AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U13019-6|AAC24443.1|  206|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF016423-5|AAB65320.1|  230|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    27   8.1  

>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -2

Query: 175 PKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFC---IRQKAREMTETRQRLP 17
           P+ SPLR A++ R  STS   S +++  +++ +        R+++R ++ +  R P
Sbjct: 272 PRSSPLRAAEISRRKSTSHSTSLSKRRYLRSRSRSLSKSPARRRSRHLSRSGSRTP 327


>Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.6 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -3

Query: 261 TKIPCFLLIQSQFIAVFLHSHVRYTVFFIR---SHR 163
           TK  CFL + SQF+AVFL+S     + +I+   SHR
Sbjct: 235 TKAICFLTV-SQFVAVFLNSFGMIVLVYIQESISHR 269


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -2

Query: 298 AERCMQSACKHADEDSLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLRP 152
           A R   S C +     L PP P P   C  P P    C   P P+P  P
Sbjct: 73  APRPSPSCCPYVPPAPL-PPPPPPASPCCGPSPVPAPC-CPPPPAPAAP 119


>U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical
           protein C50F7.9 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 305 ASVQHLPWLNWLGTNNGHNSRS 370
           +S Q++ WLNWL  NN H   S
Sbjct: 87  SSKQYILWLNWLVDNNEHMCNS 108


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 244 PPDPEPVHRC-LPPLPRQVYCLLHPKPSP 161
           PP PEP+  C  PP P Q Y  L P P P
Sbjct: 27  PPCPEPMPVCATPPCPPQ-YAPLPPPPMP 54


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 166 MASDEEDSIPDVGVEEDSDELALDQEE 246
           M  +EE+   + G +ED DE+ +D EE
Sbjct: 35  MEDEEEEMEENEGDDEDEDEMVMDDEE 61


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
            protein protein 6 protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 154  VGVAMASDEEDSIPDVGVE--EDSDELALDQEETRNLRPRAYTPTAYNALPS 303
            +G++  SDE   IP +G+E  +DS +    +E  + ++P   T     A P+
Sbjct: 859  LGLSQKSDESGEIPGLGMEKLDDSVKEKEKEEMMKKIKPAESTTPTVKASPA 910


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 277 PTAYNALPSGFRPTPSLA 330
           P  +N+ PSGF P PS+A
Sbjct: 666 PMRHNSYPSGFEPPPSVA 683


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 277 PTAYNALPSGFRPTPSLA 330
           P  +N+ PSGF P PS+A
Sbjct: 666 PMRHNSYPSGFEPPPSVA 683


>AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical
           protein H27M09.5 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 202 PRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVK 86
           P+  Y L    PS  +P K +  N  + PLS  +K S K
Sbjct: 239 PKSYYSLPPTSPSKEKPTKKISRNYLADPLSPGDKKSAK 277


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 232 EPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSR 107
           E V + +PP P +V  +  PKPS  +P +V   N T+ P ++
Sbjct: 434 EVVKKSVPPKPVEVKKVETPKPS--QPPQVKPTNHTAVPATK 473


>U13019-6|AAC24443.1|  206|Caenorhabditis elegans Hypothetical
           protein T12A2.3 protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 356 HNSRSSKNTSYLPGSNSKFTSKNLERPSELSRESLKSK 469
           H SR +   S  PGS S   S +    SELS +   SK
Sbjct: 76  HQSRVAPKRSRSPGSTSPSASNSSSSSSELSFDMFSSK 113


>AF016423-5|AAB65320.1|  230|Caenorhabditis elegans Hypothetical
           protein F40A3.2 protein.
          Length = 230

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 157 GVAMASDEEDSIPDVGVEEDSDELALDQEETRNLRPRAYTPTA 285
           G+  ASD+E S+  V +  DS +   D+EE   ++ R    T+
Sbjct: 176 GLLEASDDEKSVKSVKIAADSGKEDKDKEEEEVIKMRNSATTS 218


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 166 SPLRPAKVLRENSTSFPLSRTEKLSVKN 83
           +PL    V  +N+T FP+ +T K ++KN
Sbjct: 589 NPLWKYSVTLDNTTCFPILKTRKATLKN 616


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,919,686
Number of Sequences: 27780
Number of extensions: 246522
Number of successful extensions: 1109
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)