Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   5.8  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 409 VYIEEPRAPVRAVQRKPQEQ 468
           VYI +PR P   ++R+P+ +
Sbjct: 104 VYIPQPRPPHPRLRREPEAE 123



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 409 VYIEEPRAPVRAVQRKPQEQ 468
           VYI +PR P   ++R+P+ +
Sbjct: 130 VYIPQPRPPHPRLRREPEAE 149


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -2

Query: 220 RCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFC 65
           RC    PR+ +    P    L    +    +T+ P++ T+   V+N+    C
Sbjct: 298 RCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTC 349


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 394 RQQQQVYIEEPRAPVRAVQRKPQEQR 471
           +QQQQ   ++P+   +  Q++ Q+QR
Sbjct: 831 QQQQQQQQQQPQQQQQQQQQQQQQQR 856


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 106 TEKLSVKNYNTDF 68
           T+ L +KNYN D+
Sbjct: 99  TKNLEIKNYNIDW 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,242
Number of Sequences: 438
Number of extensions: 3377
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)