Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303G12f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 33 0.088
At5g22560.1 68418.m02635 hypothetical protein contains Pfam prof... 33 0.12
At5g67200.1 68418.m08471 leucine-rich repeat transmembrane prote... 31 0.62
At5g42905.1 68418.m05230 hypothetical protein 31 0.62
At4g18390.1 68417.m02729 TCP family transcription factor, putati... 31 0.62
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 1.1
At2g05290.1 68415.m00557 expressed protein similar to zinc finge... 29 1.4
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i... 29 1.9
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 29 2.5
At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical... 29 2.5
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 28 3.3
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 28 3.3
At5g64400.1 68418.m08090 expressed protein contains Pfam domain,... 28 4.4
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 4.4
At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase (A... 28 4.4
At5g57390.1 68418.m07170 ovule development protein, putative sim... 27 5.8
At5g37010.1 68418.m04438 expressed protein 27 5.8
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n... 27 5.8
At1g01530.1 68414.m00069 MADS-box protein (AGL28) similar to MAD... 27 5.8
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 27 7.7
At5g22310.1 68418.m02603 expressed protein 27 7.7
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 27 7.7
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 33.5 bits (73), Expect = 0.088
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 284 HTTLCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYL 391
HT++C +SVQ +PW W G++ +NS N +++
Sbjct: 147 HTSIC--SSVQFIPWRPWEGSDTNNNSGQCLNPAFV 180
>At5g22560.1 68418.m02635 hypothetical protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 517
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Frame = -2
Query: 337 PVQPGKVLDGSRWAE-----RCMQSACKHADEDSLFPPDPEPVHRCLPPLPRQVYCLLHP 173
P QP K +G RW RC ++ P P+ PPLP L P
Sbjct: 261 PSQPKKA-EGERWTNMFCGSRCFNMLSPWKNKVQRETSTPPPIETKTPPLPPPPPTLTQP 319
Query: 172 KPSPLRP 152
P PL P
Sbjct: 320 HPKPLTP 326
>At5g67200.1 68418.m08471 leucine-rich repeat transmembrane protein
kinase, putative
Length = 669
Score = 30.7 bits (66), Expect = 0.62
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 172 KPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFCIRQKAREMTETRQRLPRA 11
+P+P A + ++ + RT + V N +T+ R+K + ET QR+P +
Sbjct: 318 EPNPKGEASLSQQQQSQNQTPRTRAVPVLNSDTESQKREKEVQFQETEQRIPNS 371
>At5g42905.1 68418.m05230 hypothetical protein
Length = 258
Score = 30.7 bits (66), Expect = 0.62
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 239 RRKQGIFVRVLTRRLHTTLCPAASVQHLPW 328
RR+QG F + L L+ LC +S + +PW
Sbjct: 48 RRQQGFFSKSLFEWLYDNLCDRSSCEDIPW 77
>At4g18390.1 68417.m02729 TCP family transcription factor, putative
similar to TFPD (GI:6681577) [Arabidopsis thaliana];
teosinte branched1 protein - Zea mays, PIR2:T04347
Length = 365
Score = 30.7 bits (66), Expect = 0.62
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 359 NSRSSKNTSYLPGSNSKFTSKNLERPSELSRESLKSKDH 475
NS +SKN+S L S S+ K ER E + + K +DH
Sbjct: 136 NSDTSKNSSGLSLSRSELRDKARERARERTAKETKERDH 174
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 241 PDPEPVHRCLPPLPRQVYCLLHPKPSPL 158
P P PVH PP P C P P+P+
Sbjct: 682 PPPSPVHYSSPPPPPSAPCEESPPPAPV 709
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = -2
Query: 250 LFPPDPEPVHRCLPP----LPRQVYCLLHPKPSPLRP 152
++ P P PV+ PP P VYC P P P P
Sbjct: 509 VYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSP 545
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLPRQVYCLLHPKPSPL 158
PP P PVH PP P Y P PSP+
Sbjct: 661 PPPPPPVHYSSPPPPEVHY--HSPPPSPV 687
>At2g05290.1 68415.m00557 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 383
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 374 KNTSYLPGSNSKFTSKNLERPSELSRESLKSK 469
+NT G N K S++LE S+L+R SL+ +
Sbjct: 329 RNTKDRKGKNRKIMSESLENKSDLNRNSLEKR 360
>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
identical to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 439
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 290 TLCPAASVQHLPWLNWLGTNNGHNSRSSKNTSYLPG-SNSKFTSKNLERPSELSRESLKS 466
TL P+++ +++ NN H+S ++SYL ++ T+K L PS+ S+
Sbjct: 3 TLTPSSASTPKTSFDFMKNNNSHSSLYVSSSSYLSSKEDALVTTKKLMEPSKTLNMSINP 62
Query: 467 K 469
K
Sbjct: 63 K 63
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 253 SLFPPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSF--PLSRTEKLSVKNY 80
SL PP P P PP P Y + P P P RP F PL + +KN+
Sbjct: 77 SLPPPSPSPEPEHYPPPPYHHY--ITPSPPPPRPLPPPPPPPLHFSSPLIKKVYPVIKNF 134
Query: 79 NT 74
T
Sbjct: 135 QT 136
>At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical to
Cytochrome P450 [Catharanthus roseus] (gi|404690)
Length = 476
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 194 LTWEWRKTAMNWLWIRRKQ 250
L W WR A+NW+W+R K+
Sbjct: 20 LNWVWR--AVNWVWLRPKR 36
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPA 149
PP P+P PP P+ PKP P +PA
Sbjct: 28 PPKPKPAPAPTPPKPKPTPAPTPPKPKP-KPA 58
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPA 149
PP P+P PP P+ PKP P +PA
Sbjct: 61 PPKPKPAPAPTPPKPKPAPAPTPPKPKP-KPA 91
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKV 143
PP+P+P PP P+ V C PKP P V
Sbjct: 82 PPEPKPAP---PPAPKPVPCPSPPKPPAPTPKPV 112
>At5g64400.1 68418.m08090 expressed protein contains Pfam domain,
PF04933: Protein of unknown function (DUF657)
Length = 144
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 241 PDPEPVHRCLPPLPRQ 194
P P+PVHR PP P Q
Sbjct: 22 PAPQPVHRAPPPAPAQ 37
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLPRQVYCLLHPKPSP 161
PP P P H PP P VY P P P
Sbjct: 769 PPPPSPAHYSPPPSP-PVYYYNSPPPPP 795
>At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase
(AOP1.2) identical to GI:16118887; contains PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 322
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 187 SIPDVGVEEDSDELALDQEETRNLRPRAYT 276
SIP GV DS E +D+E R +P YT
Sbjct: 269 SIPKTGVIIDSPEELVDKEHPRIFKPFEYT 298
>At5g57390.1 68418.m07170 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 555
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 287 TTLCPAASVQ-HLPWLNWLGTNNGHNSRSSKNTSYLPGSNSKFTSKNLERPSELS 448
++L P++S H WL++ +NN +N SS N P S + + PS LS
Sbjct: 16 SSLSPSSSSSSHQNWLSFSLSNNNNNFNSSSN----PNLTSSTSDHHHPHPSHLS 66
>At5g37010.1 68418.m04438 expressed protein
Length = 637
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 244 PPDPEPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKN 83
P P P P ++ P P + NS +FPLS+ +KL N
Sbjct: 278 PRSQSPARAASQPSPSKLSRKTEHSPYRRNPLSEIDPNSVAFPLSQGDKLGSGN 331
>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
nearly identical to retinoblastoma-related protein
[Arabidopsis thaliana] GI:8777927; contains Pfam
profiles: PF01858 retinoblastoma-associated protein A
domain, PF01857 retinoblastoma-associated protein B
domain
Length = 1013
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = -2
Query: 232 EPVHRCLPPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFCIRQK 53
E HRC+ ++ H + L PA + R T+F LS+ + ++ + D R+
Sbjct: 523 ERFHRCMLACSAELVLATHKTITMLFPAVLERTGITAFDLSKVIESFIR--HEDSLPREL 580
Query: 52 AREMTETRQRL 20
R + +RL
Sbjct: 581 RRHLNSLEERL 591
>At1g01530.1 68414.m00069 MADS-box protein (AGL28) similar to
MADS-box transcription factor GI:6580943 from [Picea
abies]; contains Pfam profile PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain)
Length = 247
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = -2
Query: 196 QVYCLLHPKPSPLRP---AKVLRENSTSFPLSRTE-KLSVKNYNTDFCIRQKAREMTETR 29
+ Y HP + L +V+R N+T+F SRT+ ++ + N + + +K +E ET+
Sbjct: 58 KAYSFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQ-ETK 116
Query: 28 QRLPRAE 8
Q + + E
Sbjct: 117 QSIVQNE 123
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 196 DVGVEEDSDELALDQEETRNLRPRAYTPTA 285
D+G+EE+++ L D +E+ RP ++ TA
Sbjct: 408 DIGLEEEAERLFNDMKESVQCRPDNFSYTA 437
>At5g22310.1 68418.m02603 expressed protein
Length = 481
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -2
Query: 211 PPLPRQVYCLLHPKPSPLRPAKVLRENSTSFPLSRTEKLS-VKNYNTDFCIRQKAREMTE 35
PP+ CL KPS R K +S FP ++ +S + + D C R T
Sbjct: 99 PPVNSDKDCLRSKKPSRYRAKKSTEFSSIDFPPRSSDPISRLSSERIDLCDDMIRRRSTN 158
Query: 34 TRQRLP 17
++ P
Sbjct: 159 PQKLNP 164
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 262 PRAYTPTAYNALPSGFRPTP 321
P Y P AY A P G+ P P
Sbjct: 51 PAGYPPGAYPAAPGGYPPAP 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,320,678
Number of Sequences: 28952
Number of extensions: 231864
Number of successful extensions: 1113
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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