Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G10f
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   1.6  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    26   2.9  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   3.8  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   3.8  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   6.7  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.7  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   6.7  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  AECVVSLPATKDKPKPQTKAANAPPE 116
           AE ++S    ++KP P +K +N P E
Sbjct: 150 AESIISAVLGEEKPDPSSKVSNIPEE 175


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 160 LLSSAVRSLGNLFQQYSGTRVIN*LNHQNTSKCRGLLMNTPCVYQKLS 303
           +++ A  SL NL++    T V++  +HQN +    LL+N   +Y  LS
Sbjct: 153 MMTHAQASLFNLYEGRWWTLVVSIFSHQNLAH---LLVNCVAIYSFLS 197


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 412  EDYQPGRGCVTFQXWQRQSHDQRSYMPHIXSPLSSSGK 299
            ED +PG  C   + W+R  +++  Y     +  S++G+
Sbjct: 942  EDDEPGSICYNQRLWRRNRNEKLIYRTRPLAEYSTNGR 979


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 55  AFQLLRTNLNLKRKQQMPHPRLSN 126
           AFQLLR+   L   Q+  HP+L +
Sbjct: 632 AFQLLRSGSELAHGQRPSHPKLKD 655


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 QWYKGDKLIKPSKYFQMSRTADEYTLRISEAFP 305
           Q+ + +K+    +Y Q     DE  L++ E+FP
Sbjct: 401 QYMESEKIPTIDEYLQEYSNEDEIVLQVLESFP 433


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 280 VYSSAVLDIWKYFDGLISLSPLYHCTVGRGF 188
           VYSS ++DI       I +S L  CT   GF
Sbjct: 125 VYSSGIIDIASELHSSIPVSTLGSCTFLVGF 155


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 9   INSAGEARCDAECVVSLPATKDKPKPQTKAANA 107
           +N A  A C   C +S      +PK    +ANA
Sbjct: 36  VNDAAAALCRVYCYLSRNGLLKRPKEDDSSANA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,222
Number of Sequences: 5004
Number of extensions: 34761
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)