Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303G10f
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0113 + 1188285-1188420,1189245-1189795 30 0.94
11_04_0387 - 17037150-17037661,17038194-17038324,17038395-17038453 29 2.2
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 29 2.2
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 28 3.8
04_01_0114 + 1196580-1196585,1196972-1197063,1197761-1197858,119... 28 3.8
08_01_1027 - 10373760-10373837,10373918-10374201,10374286-10374394 27 5.0
03_02_0791 + 11222291-11224237 27 5.0
01_05_0092 - 18058555-18060084 27 5.0
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 6.6
09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040 27 6.6
03_06_0316 + 33091194-33091370,33091451-33092155 27 6.6
11_06_0690 + 26303733-26306540 27 8.7
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 27 8.7
04_01_0115 + 1207996-1208008,1208253-1208512 27 8.7
>04_01_0113 + 1188285-1188420,1189245-1189795
Length = 228
Score = 29.9 bits (64), Expect = 0.94
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 298 ASDIRRVYSSAVLDIWKYFDGLISLSPLYHCTVGRGFPTILQLNSIACPS 149
A+D +Y D K+F+ + L +CT +G T L L SIA P+
Sbjct: 81 AADPGLIYDITASDYLKFFNCMGGLGSGDNCTTAKGSLTDLNLPSIAIPN 130
>11_04_0387 - 17037150-17037661,17038194-17038324,17038395-17038453
Length = 233
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 36 DAECVVSLPATKDKPKPQT--KAANAPPEIIEPLKDKIVAEGQAI 164
D EC +SL ++ P P +A APP+ +I A QA+
Sbjct: 153 DPECALSLLSSSLHPSPAAGISSATAPPQFAPSSFSRIAASSQAV 197
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 298 ASDIRRVYSSAVLDIWKYFDGLISLSPLYHCTVGRGFPTILQLNSIACPS 149
A+D +Y LD K+F+ + L +CT +G L L SIA P+
Sbjct: 608 AADPGLIYDINPLDYLKFFNCMGGLGSQDNCTTTKGSVIDLNLPSIAIPN 657
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Frame = +3
Query: 15 SAGEARCDAECVVSLPATKDKPKPQTKAANAPPEIIEPLKDKIVAEGQAIEFS------- 173
+A + C + + S+ P P PP +E L+ ++V++G +E +
Sbjct: 20 AASASACSSARLSSVSECPPPPPPPLPRPRPPPPAVEALRIRLVSKGVILEVAEVERVRR 79
Query: 174 -CKIVGKPL 197
C++VG+ L
Sbjct: 80 ECRVVGRIL 88
>04_01_0114 +
1196580-1196585,1196972-1197063,1197761-1197858,
1198202-1198357,1202816-1203429,1203541-1203611,
1203707-1203952,1204359-1204485,1204993-1205185,
1205553-1206109
Length = 719
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 298 ASDIRRVYSSAVLDIWKYFDGLISLSPLYHCTVGRGFPTILQLNSIACPS 149
A+D +Y D +K+F+ + L +CT +G L L SIA P+
Sbjct: 571 AADPGLIYDIEPSDYFKFFNCMGGLGSADNCTTVKGSLADLNLPSIAIPN 620
>08_01_1027 - 10373760-10373837,10373918-10374201,10374286-10374394
Length = 156
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 376 QXWQRQSHDQRSYMPHIXSPLSSSGKASDIRRVYSSAVLDIWKYFDGLISLS 221
+ W+ +S +R M HI L SG A ++A+L I Y L+ L+
Sbjct: 92 EEWELESEVRREIMEHIFPLLRRSGNARPPTPAAAAALLQILAYLLLLLRLA 143
>03_02_0791 + 11222291-11224237
Length = 648
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = -1
Query: 426 RGQGWKIISLVGAVSLFXFGSXSHTTSGVICHTXVVPFRLXGKLLIYAGCIHQQSS 259
RG+GW + V + T +G +CH L +L + IH SS
Sbjct: 258 RGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSS 313
>01_05_0092 - 18058555-18060084
Length = 509
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 60 PATKDKPKPQTKAANAPPEIIEPLKDKIVA 149
PA P+P T+AA + E +P KD++ A
Sbjct: 8 PAAAQPPRPPTRAAESGEEGGDPGKDEVAA 37
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 427 EGSGLEDYQPGRGCVTFQXWQRQSHD 350
+GS D G+G V F W+ SHD
Sbjct: 698 DGSDGSDKGKGKGKVDFSAWESNSHD 723
>09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040
Length = 339
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Frame = +3
Query: 24 EARCDAECVVSLPATKDKPKPQTKAA-----------NAPP-EIIEPLKDKIVAEGQAIE 167
E R + C + + + K KP K+A ++PP ++ LK ++ +
Sbjct: 177 EVRVNVHCALVVDSISPKKKPTIKSATYQGNWSWGETSSPPIHHVKALKSPMLTQVLECS 236
Query: 168 FSCKIVGKPLPTVQWYKGDKLIKPSKYFQMSRTAD 272
F +V + LPT+ GD+ +P + RT +
Sbjct: 237 FKLAVVRERLPTLCSIHGDEAGQPGLRRRAHRTGE 271
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 60 PATKDKPKPQTKAANAPPEIIEPLKDKIVAEGQA 161
PA KPKP+ KAA P +P K K A+ +A
Sbjct: 136 PAAAAKPKPKPKAAAKPKAAAKP-KAKAPAKSKA 168
>11_06_0690 + 26303733-26306540
Length = 935
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 51 VSLPATKDKPKPQTKAANAPPEIIEP 128
V +PA KD P P++ AA PP+ + P
Sbjct: 577 VFVPAAKDSP-PESAAATEPPQPLLP 601
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 298 ASDIRRVYSSAVLDIWKYFDGLISLSPLYHCTVGRGFPTILQLNSIACPS 149
A+D +Y D +K+F+ + L +CT +G L L SIA P+
Sbjct: 190 AADPGLIYDIEPSDYFKFFNCMGGLGSGDNCTTVKGSLADLNLPSIAIPN 239
>04_01_0115 + 1207996-1208008,1208253-1208512
Length = 90
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 298 ASDIRRVYSSAVLDIWKYFDGLISLSPLYHCTVGRGFPTILQLNSIACPS 149
A+D+ +Y A + K+F+ + L+ +CT + L L SIA P+
Sbjct: 37 AADLGLIYDIAASNYLKFFNCIGGLATGDNCTTAKRSLADLNLPSIAIPN 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,608,079
Number of Sequences: 37544
Number of extensions: 222556
Number of successful extensions: 737
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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