Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G10f
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42780.1 68418.m05210 zinc finger homeobox family protein / Z...    28   3.1  
At1g05290.1 68414.m00535 hypothetical protein                          28   3.1  
At1g12800.1 68414.m01486 S1 RNA-binding domain-containing protei...    27   7.2  
At4g07390.1 68417.m01134 PQ-loop repeat family protein / transme...    26   9.5  
At4g00980.1 68417.m00132 zinc knuckle (CCHC-type) family protein...    26   9.5  
At3g57710.1 68416.m06429 protein kinase family protein contains ...    26   9.5  
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai...    26   9.5  
At1g15825.1 68414.m01899 hydroxyproline-rich glycoprotein family...    26   9.5  

>At5g42780.1 68418.m05210 zinc finger homeobox family protein /
           ZF-HD homeobox family protein similar to unknown protein
           (pir||T05568)
          Length = 242

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 57  LPATKDKPKPQTKAANAPPEIIEPL 131
           LP  K KPKP T+  +APP I++ +
Sbjct: 32  LPTCKTKPKP-TRTHHAPPPILDSI 55


>At1g05290.1 68414.m00535 hypothetical protein
          Length = 351

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 415 LEDYQPGRGCVTFQXWQRQSHDQRSYMPHIXSPLSSSGKASDIRRVYSSAVL 260
           L+ Y P    +  +     + D     P    P S+SG +SDI + Y++  L
Sbjct: 171 LKQYNPEEDLILTELIDELARDNSETTPTNTLPTSASGMSSDIHKDYNTEAL 222


>At1g12800.1 68414.m01486 S1 RNA-binding domain-containing protein
           contains Pfam domain, PF00575: S1 RNA binding domain
          Length = 767

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
 Frame = +3

Query: 51  VSLPATKDKPKPQTKAANAPPEIIEPLKDKIVAEGQAIEFSCKIVGKPL------PTVQW 212
           + L  +KD  K  T + +    +   LKD +  E   ++    ++ KPL      P VQ 
Sbjct: 114 IPLDWSKDNKKKSTSSLDGLKLVKPVLKDGVKFERPVMKKPSPVLKKPLVEAVAAPKVQR 173

Query: 213 YKGDKLIKPSKYFQMSRTADEYTLRI 290
                L KPS ++  +   +E  LR+
Sbjct: 174 LPNVILRKPSSFYTSNGDDEESKLRL 199


>At4g07390.1 68417.m01134 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q60441
           Mannose-P-dolichol utilization defect 1 protein
           (Suppressor of Lec15 and Lec35 glycosylation mutation)
           {Cricetulus griseus}, Lec35 protein [Cricetulus griseus]
           GI:9858721; contains Pfam profile PF04193: PQ loop
           repeat
          Length = 235

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 200 WKRFPNDLTAELNSLSFSDNF 138
           WK F N  T EL+ L+F  NF
Sbjct: 163 WKNFKNKSTGELSFLTFFMNF 183


>At4g00980.1 68417.m00132 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 488

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
 Frame = +3

Query: 111 PEIIEPLKDKIVAE------GQAIEFSCKIVGKPLPTVQWYKGDKLI-----KPSKYFQM 257
           PE + P K++ V+       G+   F CK+  K   TVQ Y+G   +     +  K F+ 
Sbjct: 80  PETVAPAKNETVSVAAASVGGEDERFICKLSEKQNATVQRYRGQPFLSIGSQEHGKAFRG 139

Query: 258 SRTADEYTLRISEAFPEDERGLXMC 332
           +  +      I + F   E G+  C
Sbjct: 140 AHLSTNQWSVIKKNFAAIEDGIKQC 164


>At3g57710.1 68416.m06429 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 351

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 379 FQXWQRQSHDQRSYMPHIXSPLSSSGKASDIRRVYSSAVL 260
           +  W R   + RSYM    S    +GK   ++ VY+  VL
Sbjct: 71  YYKWYRGEIEDRSYMIKRFSEDEITGKRHRVKEVYNDIVL 110


>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
           domain-containing protein similar to SP|P49373
           Transcription elongation factor S-II (TFIIS)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF01096: Transcription factor S-II (TFIIS)
          Length = 378

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = +3

Query: 81  KPQTKAANAPPEII------EPLKDKIVAEGQAIEFSCKIVGK 191
           K   KAANAPP++       +P++DKI      +E  C++ G+
Sbjct: 188 KAPAKAANAPPKLTAMLKCNDPVRDKI--RELLVEALCRVAGE 228


>At1g15825.1 68414.m01899 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 126

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 60  PATKDKPKPQTKAANAPPEIIEPLKDKIVAEGQAIEFSCKIVGKPLP 200
           P   D P PQT     PPE+  P +  + +    IE    I   P P
Sbjct: 53  PVLGDFP-PQTPDFTTPPEVTNPWQPPVTSFAPPIESIPTIPDNPFP 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,296,942
Number of Sequences: 28952
Number of extensions: 181489
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)