Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303G09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 47 1e-06
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 28 0.73
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo... 28 0.97
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 27 1.7
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 2.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 3.0
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 3.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 3.9
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 5.2
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 5.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 5.2
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 6.8
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 6.8
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 25 9.0
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 9.0
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 47.2 bits (107), Expect = 1e-06
Identities = 26/113 (23%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Frame = +2
Query: 143 DKKGQGIAKNFAESLEYGEKKKWFH-QLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTL 319
+++G+G + + + W++ LPE K ++ + + +L L D+
Sbjct: 17 NEEGEGTIDTKPQGVMFDPGVPWYNIPLPELHED-KKFVNVDHVSELETRGLLLLKEDSE 75
Query: 320 AYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLIN 478
+ ++T G++D + +TL++ G DR++A T+L+Q++P++ + AL L++
Sbjct: 76 RF-SETLGHGTADKRMLQTLISSGTTSDRISALTLLVQESPIHAVKALETLLS 127
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 227 QVADETISFFHHIQGFRRNSLRYPGLSYHLRSYQLDRN 114
QVA++ FFH+ G R+ + SYH +Y +D N
Sbjct: 632 QVAEKVKRFFHYY-GINRHKMTTLTPSYHAETYGVDDN 668
>SPBC1539.10 |||ribosome biogenesis protein Nop16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 27.9 bits (59), Expect = 0.97
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = +2
Query: 191 YGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWA 370
+GE K L +E P TE + QL +EA K + +H +
Sbjct: 114 HGEAKTLDDVLDKEISIAPA--KTEVVRQLEEEAVKK----AARQSNKMLPLSAFEHAYI 167
Query: 371 KTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLINNVKPAK 496
+ L+NK D + A + ++ L+N + L+NL +K K
Sbjct: 168 QRLINKYGTEDFESMAKDVKLNSKLFNGSKLKNLYIRMKATK 209
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 1.7
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 308 RARNWWLPFLIVQF 267
R+ WWLP+++V+F
Sbjct: 113 RSHAWWLPYIVVEF 126
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +2
Query: 206 KWFHQLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNR-SGSSDHQWAKTLL 382
K HQ+ E + STE +E L S+LH + K + G +++ W T +
Sbjct: 546 KPIHQIGAEASSSNNVKSTELLEGLANARKSALHEIFVKINLKIDDFLGLAEYDWTTTQV 605
Query: 383 NKGAIG 400
K G
Sbjct: 606 RKDVSG 611
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 141 MIRKARVSQRISPKALNMVKKRNGFISYLKNQSHCQKH 254
++ S R LNM KKR I +++ H QK+
Sbjct: 174 LVYAVEFSHRSGRDLLNMAKKRTNVIPIVEDARHVQKY 211
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 133 LISLTVISVSLIN*YVFLKSFMLHCKLLYHVTLNINKARENL 8
LIS V L++ +K +++ +L Y + L I ARENL
Sbjct: 829 LISSLRSKVDLLDRKFLIKEYLVLQQLKYSINLLITAARENL 870
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 3.9
Identities = 22/109 (20%), Positives = 44/109 (40%)
Frame = +2
Query: 65 KHKRFEENILIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTL 244
K K E+ + +A ++ +A ++D K N SL+ PE P+T
Sbjct: 471 KAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDGESSPETPLTK 530
Query: 245 PKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKG 391
+ +L + + + +G+T + K+ + S Q A + +G
Sbjct: 531 ASKSKKAKASKLANDTSKNANGETKSTPKKSKKKTSKAQQEANSTTAEG 579
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 347 GSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTA 460
G ++ + TL +KG V+AA L+Q LY + A
Sbjct: 1235 GFAEEPYRMTLFSKGQEALNVSAADFLVQGENLYFVVA 1272
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 278 LRKEATSSLHGDTLAYETKTNRSGS 352
LR+ + LHG LAY+ +SGS
Sbjct: 222 LRQSSVEYLHGSLLAYKELFEKSGS 246
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 164 AKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKE 289
A+N A E K HQL E + + ++ EQ EQL+ E
Sbjct: 1451 AENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQLKSE 1492
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 108 TLITVKLIRTQMIRKARVSQRISPKALNMVKKRNGFISYLKN 233
T+ +V+L TQ + V + + PK + V K GF+ + KN
Sbjct: 529 TVSSVRLGHTQRHLR-HVPEYLLPKGMQAVNKDIGFVPFKKN 569
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 205 LFFTIFKAFGEILCDTLAFLI-ICVLISLTVISVSLIN*YVFLKSFMLHCKLLYHV 41
LF+ F A G LC T+ L +C SL + + Y ++ +L L YH+
Sbjct: 270 LFYARFSAVGHNLCPTITELCKLCSKESLDAFLPAFYDVYFQCRTRLLKPVLDYHL 325
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 147 RKARVSQRISPKALNMVKKRNGFISY 224
R A + + PKA ++K +NG I Y
Sbjct: 139 RDAEIVKAAIPKATEVLKSKNGSIDY 164
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 287 PFLIVQFVLSIMFLAM*LVLQVADETISFFHH 192
PF + LS L + L + T+ FFHH
Sbjct: 34 PFYSILCFLSFFALLLHLPCSIYSHTLHFFHH 65
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 380 LNKGAIGDRVAAATILIQDNPLYNLTALRNLINN 481
LN+G + A + + +P+YN A NL NN
Sbjct: 92 LNEGRHSPKSAISCVTQPVSPVYNTRAAANLRNN 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,972
Number of Sequences: 5004
Number of extensions: 41885
Number of successful extensions: 145
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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