Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)                   42   4e-04
SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   7e-04
SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_43971| Best HMM Match : I-set (HMM E-Value=1.7e-09)                 29   1.8  
SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)                    29   1.8  
SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)         28   4.1  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_18125| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_27685| Best HMM Match : CSE2 (HMM E-Value=9.5)                      27   7.1  
SB_59356| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)
          Length = 573

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
 Frame = +2

Query: 119 GQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEP--VTLPKTLSTEQIEQLRKEA 292
           G+ D + ++K   G  K  +  +E  + KK      E      L   L+  +I + +   
Sbjct: 62  GEEDDSNEEKGTSGSTKTSSVLIEDTKNKKISANKTEATPQAVLIDQLTKLEIPETQANL 121

Query: 293 TSSLHG---DTLAYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQ 433
           T S  G   D    +   +RS  SD +W +T+++ G +GD++AA T+ +Q
Sbjct: 122 TVSPGGKWFDQCFLDLVKSRSKGSDGEWLRTVVSSGTLGDKIAALTLQVQ 171


>SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
 Frame = +2

Query: 119 GQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEP--VTLPKTLSTEQIEQLRKEA 292
           G+ D + ++K   G  K  +  +E  + KK      E      L   L+  +I + +   
Sbjct: 7   GEEDDSNEEKGTSGSTKTSSVLIEDTKNKKISANKTEATPQAVLIDQLTKLEIPETQANL 66

Query: 293 TSSLHG---DTLAYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQ 433
           T S  G   D        +RS  SD +W +T+++ G +GD++AA T+ +Q
Sbjct: 67  TVSPGGKWFDQCFLNLVKSRSKGSDGEWLRTVVSSGTLGDKIAALTLQVQ 116


>SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 260 TEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDH----QWAKTLLNKGAIGDRVAAATIL 427
           TE  E  RK  T+S+H  T   +  T + GSS H     W  TLL KG         T L
Sbjct: 211 TELPEGERKSITTSIHTTTNQEDHHTFQGGSSSHYRGMDWIGTLLEKGQKLREGMVKTAL 270

Query: 428 IQD 436
           + D
Sbjct: 271 LDD 273


>SB_43971| Best HMM Match : I-set (HMM E-Value=1.7e-09)
          Length = 240

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 173 FAESLEYGEKKKWFHQLPEEPVTLP-KTLSTEQIEQLRKEATSSLHGDTLAY 325
           FAE   +G + KW   L    +    +T S     QLRK  T   H D +AY
Sbjct: 4   FAERWRFGNETKWRANLTARALYYSMRTYSDRSTRQLRK-CTGLYHSDRIAY 54


>SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)
          Length = 1067

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +2

Query: 260  TEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQDN 439
            +E+ E++ +E    LH      ++K     S +     + +  GAI D    AT     N
Sbjct: 977  SEEFEEIYEEVPEQLHSTVSPEKSKMEDVESQEKGHVPSGIESGAIQDEAFTATSCKDKN 1036

Query: 440  PLYNLTALRN 469
             L +L  L N
Sbjct: 1037 TLPHLARLNN 1046


>SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 318 NVSPCKELVASFLNCSICS 262
           N S CKE+  SFLN  ICS
Sbjct: 552 NPSKCKEMSVSFLNYDICS 570


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +3

Query: 162 SQRISPKALNMVKKRNGFISYLKNQSHCQKHYRQNK------LNN*ERKPPVPCTVIH 317
           ++R S + + + K+RN    Y K ++    HYR  K      +    + PP P T  H
Sbjct: 341 TRRTSSRGIRLHKRRNAMFVYAKTKALIWYHYRVRKWVSSQPVGGYTQTPPPPTTYAH 398


>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
          Length = 609

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
 Frame = +2

Query: 263 EQIEQLRKEATSSLHGDTLAYE-TKTNRSGSSDHQWAKTLLNKGA-------IGDRVAAA 418
           E+ E + +E    L+ D +A   ++  RS     Q   TL   G+       +GD V   
Sbjct: 73  EEEETICQEYEGGLNDDKIAGGLSQLGRSADGTMQVYLTLFLPGSDLTDITPLGDYVHLQ 132

Query: 419 TILIQDNPLYNLTALRNLIN 478
           T+++  N L +LTAL N+ N
Sbjct: 133 TVILSHNSLTDLTALGNMPN 152


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 227 EEPVTLPKTLSTEQIEQLRKEATSSLHGD 313
           E P+     + T QI+ LRK +T S HGD
Sbjct: 268 ERPIATTTVIPTSQIKHLRK-STISFHGD 295


>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 350 SRFCLSSFHKLMYHRARNWWLPFLIVQF-VLSIMFLAM*LVL 228
           S  C   FHK M    +   LP+LIVQ  ++  +FL + L+L
Sbjct: 469 SEVCEKGFHKSMSRCVKCPTLPWLIVQLSMIGFIFLVIILIL 510


>SB_18125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 71  KRFEENILIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVT 241
           K +   +++ +  + Y  A+     K   GIAK F +   Y  K KW H +  +PVT
Sbjct: 3   KTYRYALVVIDIASRYKDAEA-LTTKDSSGIAKGFEKI--YSRKLKWPHTVIVDPVT 56


>SB_27685| Best HMM Match : CSE2 (HMM E-Value=9.5)
          Length = 246

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 266 QIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPL 445
           QIEQ  +    SLH   L++E + N + + +    K  +++G   ++V       +++P 
Sbjct: 120 QIEQNEQTTEVSLHIPLLSHEMEENET-THEKLKVKHRMSQGMEPEKVPTKNKSWRESPK 178

Query: 446 YNLTALRNLINNV-KPAKKKDG 508
           Y    LR+L+  + +  +KK G
Sbjct: 179 YTDKILRDLLEIILEEFEKKKG 200


>SB_59356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 65  KHKRFEENILIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEK 202
           +HK+    + +D +YT+  QA   A+ K  + + +   ++L YG K
Sbjct: 319 RHKKLNPTLRVDTSYTSAEQA--RAEMKAEEWVTRVIDDNLPYGTK 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,137
Number of Sequences: 59808
Number of extensions: 292614
Number of successful extensions: 890
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)