Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase, ...    30   0.82 
At1g33520.1 68414.m04148 KOW domain-containing protein / D111/G-...    29   2.5  
At5g60750.1 68418.m07622 CAAX amino terminal protease family pro...    27   5.8  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    27   5.8  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    27   5.8  
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    27   5.8  
At1g11190.1 68414.m01282 bifunctional nuclease (BFN1) identical ...    27   5.8  
At5g59430.2 68418.m07448 telomere repeat-binding protein 1 (TRP1...    27   7.7  
At5g59430.1 68418.m07447 telomere repeat-binding protein 1 (TRP1...    27   7.7  
At1g37000.1 68414.m04612 hypothetical protein                          27   7.7  

>At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative 65% similar to
           geranylgeranyl pyrophosphate synthase [GI:413730];
          Length = 326

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 212 FHQLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYET 331
           F  LPE+P TLP  LS   I      A  SL+ D   Y T
Sbjct: 13  FCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWT 52


>At1g33520.1 68414.m04148 KOW domain-containing protein /
           D111/G-patch domain-containing protein contains Pfam
           profiles PF01585: G-patch domain, PF00467: KOW motif
          Length = 462

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 KKGQGIAKNFAESLEYGEKKKW 211
           K G+GI KN  E +E  E KKW
Sbjct: 170 KPGKGIGKNAKEDVEIKEYKKW 191


>At5g60750.1 68418.m07622 CAAX amino terminal protease family
           protein contains Pfam profile PF02517 CAAX amino
           terminal protease family protein
          Length = 347

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 296 WWLPFLIVQFVLSIMFLAM*LVLQVADETISFFHHIQGFRRNSLRYPG 153
           W +P+  V+ ++ +M L +     +    I F  HI GF + SL + G
Sbjct: 113 WKVPWT-VETIVQVMLLWVAAFWFIGSWMIPFMAHISGFHKESLTFRG 159


>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 77  FEENILIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKK 208
           F+ N  + E+   Y  ADKN +DKKG        + ++  E KK
Sbjct: 469 FQFNEEMIESLFGYAAADKNKNDKKGSSGQAALPQFVQILEPKK 512


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 77  FEENILIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKK 208
           F+ N  + E+   Y  ADKN +DKKG        + ++  E KK
Sbjct: 469 FQFNEEMIESLFGYAAADKNKNDKKGSSGQAALPQFVQILEPKK 512


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/76 (26%), Positives = 40/76 (52%)
 Frame = +3

Query: 66  SIKDLRKTY*LMRLTLITVKLIRTQMIRKARVSQRISPKALNMVKKRNGFISYLKNQSHC 245
           +I DL+K +  +RLTL T KL+   ++ +  V +  + +  + ++K    +  L ++   
Sbjct: 302 NIMDLKKQWDDVRLTLETKKLL---LLDQLHVEEPEAKEKFHKLRKTELDLQSLSSEIQK 358

Query: 246 QKHYRQNKLNN*ERKP 293
           ++  R N  N  ER+P
Sbjct: 359 REDERCNLYNELERQP 374


>At1g11190.1 68414.m01282 bifunctional nuclease (BFN1) identical to
           bifunctional nuclease bfn1 [Arabidopsis thaliana]
           gi|4099831|gb|AAD00693
          Length = 305

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 373 DSPEQRCYRR*SCRCHNSYPGQSVIQFNSAQKFNKQCQ---TGQEERRY 510
           D+P+Q C    S  CH+ +  + +    + Q F  Q Q    G  +RRY
Sbjct: 91  DTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQHYGEGTSDRRY 139


>At5g59430.2 68418.m07448 telomere repeat-binding protein 1 (TRP1)
           identical to telomere repeat-binding protein TRP1
           [Arabidopsis thaliana] GI:5459298
          Length = 578

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +2

Query: 65  KHKRFEENILIDEAYTNYGQADK-NADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVT 241
           K K F+   + D    +Y    K +   +KGQG +  F  S  + + +    ++PE  + 
Sbjct: 253 KRKNFDH--ISDSVTDDYRMRTKMHRGSRKGQGAS--FVASDSHVKLRIKSFRVPELFIE 308

Query: 242 LPKTLSTEQIEQLRKEATSSLHGD 313
           +P+T +   ++++  EA S+L  D
Sbjct: 309 IPETATVGSLKRMVMEAVSTLLSD 332


>At5g59430.1 68418.m07447 telomere repeat-binding protein 1 (TRP1)
           identical to telomere repeat-binding protein TRP1
           [Arabidopsis thaliana] GI:5459298
          Length = 578

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +2

Query: 65  KHKRFEENILIDEAYTNYGQADK-NADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVT 241
           K K F+   + D    +Y    K +   +KGQG +  F  S  + + +    ++PE  + 
Sbjct: 253 KRKNFDH--ISDSVTDDYRMRTKMHRGSRKGQGAS--FVASDSHVKLRIKSFRVPELFIE 308

Query: 242 LPKTLSTEQIEQLRKEATSSLHGD 313
           +P+T +   ++++  EA S+L  D
Sbjct: 309 IPETATVGSLKRMVMEAVSTLLSD 332


>At1g37000.1 68414.m04612 hypothetical protein
          Length = 219

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 365 WAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLIN 478
           WA       AIGD +   TI +   P  NL A   L+N
Sbjct: 28  WAMGFAAFAAIGDTIFTTTISVFSGPCLNLYATTILLN 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,758,948
Number of Sequences: 28952
Number of extensions: 211605
Number of successful extensions: 654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)