Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G07f
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   3.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    24   9.1  

>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 150 GVRRYIRSRSYCWGDQCSRSTRVGGSDGKS*NDNKFGE 37
           G + Y R+R+ C  +   R+  +  S G S N+  FG+
Sbjct: 525 GEKLYFRTRATCSAESAKRAKELVDSKGWSSNNPLFGD 562


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 282  SRPSVSFLRQIRFFPLHLLNKFGDN 356
            ++P  S L  ++F P HLL   GDN
Sbjct: 1266 NQPKPSSLMCLKFHPHHLLLACGDN 1290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,104
Number of Sequences: 5004
Number of extensions: 18717
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)