Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G07f
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 306 EERRRWGD*RSSRCGHIWS*SQHWSRRGCYIRSWSYDWCGSGMVNCVG 163
           EERR+W   R  R    W   + W +R  + R  S D  GSG    VG
Sbjct: 181 EERRKWRQRRKWRQRRKWRQRRKWRQRRKWRREGSGDREGSGEEKEVG 228


>SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 319 SSPYIF*TNLVITLNSDLLRLSGFLV*TFLYWLIFMKR 432
           +SPY F   L  T+ S  ++ +GFL+ TF+  +I   R
Sbjct: 61  NSPYTFHIQLFQTIGSSAIQNAGFLLITFIRQIILYPR 98


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 192 CGSGMVNCVG*VGTGVRRYIRSRS 121
           CG+G  N  G  GTG+ RY  S +
Sbjct: 106 CGNGHPNHTGTAGTGIARYCPSNT 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,260,619
Number of Sequences: 59808
Number of extensions: 151434
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)