Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G07f
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine r...    29   1.5  
Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    27   8.1  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      27   8.1  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    27   8.1  

>AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine
           receptor, class i protein4 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 431 LFMKISQYKNVYTKNPDNLSKSL 363
           L M  + YKN++TKN DN+ K +
Sbjct: 304 LIMTTANYKNLFTKNYDNVRKKM 326


>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 437 FTLFMKISQYKNVYTKNPDNLSKSLFNVITKF 342
           F +   +++YKN    +P   +K+L  ++T+F
Sbjct: 307 FAMEKDVAEYKNYQPNDPGRKTKALLQMVTQF 338


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 437 FTLFMKISQYKNVYTKNPDNLSKSLFNVITKF 342
           F +   +++YKN    +P   +K+L  ++T+F
Sbjct: 307 FAMEKDVAEYKNYQPNDPGRKTKALLQMVTQF 338


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 156 GTGVRRYIRSRSYCWGDQCSRSTRVGGSDG 67
           G G + + +   Y  GD+C+  T++ G DG
Sbjct: 546 GVGKQSFTKECYYVMGDECADYTQLRGPDG 575


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 437 FTLFMKISQYKNVYTKNPDNLSKSLFNVITKF 342
           F +   +++YKN    +P   +K+L  ++T+F
Sbjct: 307 FAMEKDVAEYKNYQPNDPGRKTKALLQMVTQF 338


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 437 FTLFMKISQYKNVYTKNPDNLSKSLFNVITKF 342
           F +   +++YKN    +P   +K+L  ++T+F
Sbjct: 307 FAMEKDVAEYKNYQPNDPGRKTKALLQMVTQF 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,886,266
Number of Sequences: 27780
Number of extensions: 109057
Number of successful extensions: 239
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)