Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   2.2  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   6.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.8  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   9.0  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   9.0  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = -2

Query: 199 RIQRSFRAPLNSKQIAHKPYRCGTFHNAFYHTSVSILCQSKGESKKCGPGSYTPSKREIQ 20
           R+  S+   L +K +++  Y C T  +       SILC       +  P    PS+  + 
Sbjct: 385 RVHLSYCIGLTAKSVSYLMYNCKTLKHLSVTGINSILCTELRSFSRPIPDGINPSQVPVF 444

Query: 19  IAF 11
            AF
Sbjct: 445 CAF 447


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 196 FAGLYLHLSCAEINNILHIDDR-NVECYCYS 285
           F  L LHL C+  ++ LH      + CY YS
Sbjct: 44  FFALLLHLPCSIYSHTLHFFHHFTIACYHYS 74


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 365  VKVRKTQLTFSSIRYRIYH 309
            +K+++ Q  FSSIRY IY+
Sbjct: 1155 LKLKRFQELFSSIRYAIYY 1173


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 345 LCFTNFNSLFSMKTLFPIV 401
           L F NF+++F+ K LFP V
Sbjct: 134 LQFQNFSNIFAKKNLFPKV 152


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
 Frame = +1

Query: 247 HIDDRNVECYCYSSRSEYPWM**IRYLID-------ENVSCVLRTLTH 369
           H D   V+C C+ +  EY     IR LI+        N+  VLR L H
Sbjct: 419 HYDSMLVKCTCHDATYEYTRRKMIRSLIEFRVRGVKTNIPFVLRLLMH 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,864
Number of Sequences: 5004
Number of extensions: 44055
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)