Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0342 + 14648137-14648371,14648953-14649005                       29   1.7  
02_03_0094 + 15137515-15137681,15137779-15137953                       27   6.9  
05_04_0278 - 19694590-19694757,19696331-19696391,19696503-196966...    27   9.1  

>04_03_0342 + 14648137-14648371,14648953-14649005
          Length = 95

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 301 GTHFVTSN--SNIPHYGRQCARCCLSLHKTSVNISP 200
           GTH   SN   +I   GR+C RC  +  KT+ + +P
Sbjct: 20  GTHAAMSNRSGSIQRCGRRCRRCQAAWRKTAASTTP 55


>02_03_0094 + 15137515-15137681,15137779-15137953
          Length = 113

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 104 FCLNPLPVKRRVKEMWPR 51
           +CL+P P+KRR+K+  P+
Sbjct: 47  WCLSPPPIKRRLKDTLPK 64


>05_04_0278 -
           19694590-19694757,19696331-19696391,19696503-19696658,
           19696740-19696912,19698199-19698276,19698399-19698575,
           19698924-19699001,19700573-19700692,19700803-19701183
          Length = 463

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 349 VLRTLTHCFL*KPYSQSFSYILTPLY-NLVSLFDFV 453
           VLRTL  C+    YS    YI T  Y + V ++D V
Sbjct: 374 VLRTLIRCYFSPAYSTGQKYIYTGSYDSSVCIYDVV 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,034,040
Number of Sequences: 37544
Number of extensions: 253219
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)