Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)           28   5.4  

>SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 404 VTF*PRYIIWSHCLISFSSVRSI 472
           +TF P Y IW+HC +++S V  +
Sbjct: 440 LTFCPFYRIWTHCTVTWSPVSGL 462


>SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)
          Length = 835

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 307 STGTHFVTSNSNIPHYGRQCARCCLSLHKTS 215
           ST THFVT  +  P +G   AR C   H  S
Sbjct: 37  STNTHFVTQGNLTPSFGN--ARSCRIQHNAS 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,125,438
Number of Sequences: 59808
Number of extensions: 334264
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)