Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03740.1 68414.m00354 protein kinase family protein contains ...    28   4.4  
At3g15630.1 68416.m01982 expressed protein                             27   5.8  

>At1g03740.1 68414.m00354 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 542

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 235 LSLHKTSVNISPRIQRSFRAPLNSKQIAHKPYRCGTFHNAFYHTSVSILCQSKGESKKCG 56
           LSL +T ++I P  + S    L S+    KP+ C   +   Y  S  I  + + E+K+  
Sbjct: 471 LSLLETLLSIDPDHRSSADRALESEYFKTKPFACDPSNLPKYPPSKEIDAKMRDEAKRQQ 530

Query: 55  P 53
           P
Sbjct: 531 P 531


>At3g15630.1 68416.m01982 expressed protein
          Length = 107

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 193 QRSFRAPLN---SKQIAHKPYRCGTFHNAFYHTSVSILCQSKGESKK 62
           +RS R  L    +KQ+  K     TFH+  YH++++    S    KK
Sbjct: 61  KRSLRCCLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDVRVKK 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,993,190
Number of Sequences: 28952
Number of extensions: 220814
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)