Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical pr...    27   6.2  
D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.        27   6.2  

>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 433 IAPIIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGGRS 257
           + PI  E PA+ S++  +++D P+   + E G  +VH   APF     E++ +  G  S
Sbjct: 419 VDPIFTEAPAEGSQE-EQTSDGPV--FIPEDG--SVHSTEAPFEVAATEVSEVTHGSGS 472


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 433 IAPIIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGGRS 257
           + PI  E PA+ S++  +++D P+   + E G  +VH   APF     E++ +  G  S
Sbjct: 419 VDPIFTEAPAEGSQE-EQTSDGPV--FIPEDG--SVHSTEAPFEVAATEVSEVTHGSGS 472


>Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical
           protein T27D12.2b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 304 STILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPP 173
           S I   INN+R G  + N      GNA+    +I G    P  P
Sbjct: 698 SEIFSTINNLRRGSLAANGAHMSSGNALMTDRNISGNTLLPQSP 741


>D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 304 STILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPP 173
           S I   INN+R G  + N      GNA+    +I G    P  P
Sbjct: 698 SEIFSTINNLRRGSLAANGAHMSSGNALMTDRNISGNTLLPQSP 741


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,590,941
Number of Sequences: 27780
Number of extensions: 142754
Number of successful extensions: 313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)