Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G03f
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    24   4.6  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    24   4.6  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       23   8.1  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 42  PRNSPTI*HFYNKSIANSPARHPV 113
           P NSP   + Y  S+ +  +RHP+
Sbjct: 353 PSNSPATLNSYTTSVPSGMSRHPM 376


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 77  VVKVLNCRRITRGEDVIKHYGET 9
           + K L+C R+ RGE V    G+T
Sbjct: 290 ITKGLDCGRLARGEPVTLENGKT 312


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +3

Query: 141 RRYTASKYLVTTASY----MVILYIIHVI 215
           R+   S Y  T +SY    MV+ Y+IHVI
Sbjct: 198 RKQINSPYFGTLSSYGYVLMVLYYLIHVI 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,586
Number of Sequences: 5004
Number of extensions: 24409
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)