Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303G03f
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0240 - 6157855-6157891,6158040-6158329 29 0.77
03_03_0222 - 15559996-15560188,15561120-15561150,15561645-155617... 28 1.3
02_02_0380 + 9568775-9569250,9569360-9569672 28 1.8
12_02_1098 - 26067597-26068793 27 2.3
07_03_1300 - 25609670-25609915,25610006-25610130,25610240-256104... 27 2.3
09_01_0057 - 916973-917287,917371-917495,917587-918241 27 4.1
03_06_0313 + 33073542-33074464,33074901-33075069 27 4.1
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 27 4.1
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 26 5.4
07_01_0567 - 4214196-4214351,4214539-4214845,4215005-4215069,421... 26 7.2
07_01_0198 + 1417625-1418104 26 7.2
07_01_0194 + 1384474-1384953 26 7.2
07_01_0190 + 1351321-1351800 26 7.2
07_01_0186 + 1318168-1318647 26 7.2
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 25 9.5
10_08_0143 + 15174605-15174725,15175252-15175682 25 9.5
04_01_0046 + 510721-510790,511048-511121,511459-511729,511865-51... 25 9.5
03_04_0188 - 18241815-18242477 25 9.5
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913... 25 9.5
>09_02_0240 - 6157855-6157891,6158040-6158329
Length = 108
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 167 CDNGVLYGYPVHNPCYSDFAFTTVV 241
C NG LYG + +PC D+ T++
Sbjct: 84 CYNGCLYGCSLQHPCDFDYNLATII 108
>03_03_0222 -
15559996-15560188,15561120-15561150,15561645-15561701,
15563059-15563134,15563220-15563347,15563459-15563660,
15563781-15563879,15564032-15564124,15564539-15564877
Length = 405
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 159 WMQCIAAVSCTRIATKLDD--APGNWQLTCC 73
WMQ + V+C +A K+++ APG L C
Sbjct: 149 WMQQLLIVACLSLAAKMEETAAPGTLDLQVC 179
>02_02_0380 + 9568775-9569250,9569360-9569672
Length = 262
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 147 IAAVSCTRIATKLDDAPGNWQ 85
IAAV CT++ T D AP WQ
Sbjct: 15 IAAVGCTQLTTADDAAPPVWQ 35
>12_02_1098 - 26067597-26068793
Length = 398
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 156 SKYLVTTASYMVILYIIHVIVISPLPPW 239
S L T A Y+V ++ + PLPPW
Sbjct: 70 SSRLATNAGYVVTAHLYATVEPLPLPPW 97
>07_03_1300 -
25609670-25609915,25610006-25610130,25610240-25610441,
25610533-25610631,25610735-25610821,25611120-25611431
Length = 356
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -1
Query: 162 TWMQCIAAVSCTRIATKLDD 103
+WMQ + +VSC +ATK+++
Sbjct: 137 SWMQQLLSVSCLSLATKMEE 156
>09_01_0057 - 916973-917287,917371-917495,917587-918241
Length = 364
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 174 LSQGTWMQCIAAVSCTRIATKLDD--APGNWQLTCCKSAKLSENYA 43
L WM +AAV+C +A K+++ P L C + + N A
Sbjct: 117 LGDRPWMARLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEA 162
>03_06_0313 + 33073542-33074464,33074901-33075069
Length = 363
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 135 SCTRIATKLDDAPGNWQLTCCKSAKLSENYAGRGCN 28
SC R AT DDA G KS +S + G C+
Sbjct: 254 SCARKATADDDAGGKCHCPKKKSVSISPPFLGHFCH 289
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 71 LQQVNCQFPGASSSLVAIRVQLTAAIHCIQVPCDNGVLYGYPVHNP 208
LQQV + +S I+V AA+H D G L G P NP
Sbjct: 256 LQQVQARNQQLQASTQEIKVDTNAAVHMRAAGAD-GSLIGVPGANP 300
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 164 PCDNGVLYGYPVHNPCYSDFAFTTVVYVL 250
P D G +G+ N CYS F FT+ VL
Sbjct: 233 PLDPGKAWGHYWRNVCYSLFWFTSCEAVL 261
>07_01_0567 -
4214196-4214351,4214539-4214845,4215005-4215069,
4215406-4215471,4215594-4215639,4215671-4216200
Length = 389
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 144 RYTASKYLVTTASYMVILYIIHVIVISPLP 233
+YT S ++ A +V+ YI+HV +I P
Sbjct: 212 QYTISVNMIILALMIVLTYIVHVKIIEYWP 241
>07_01_0198 + 1417625-1418104
Length = 159
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 137 TAAIHCIQVPCDNGVLYGYPVHNP 208
T AI C +V CDNG ++ +NP
Sbjct: 118 TTAIGCARVDCDNGGVFITCNYNP 141
>07_01_0194 + 1384474-1384953
Length = 159
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 137 TAAIHCIQVPCDNGVLYGYPVHNP 208
T AI C +V CDNG ++ +NP
Sbjct: 118 TTAIGCARVDCDNGGVFITCNYNP 141
>07_01_0190 + 1351321-1351800
Length = 159
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 137 TAAIHCIQVPCDNGVLYGYPVHNP 208
T AI C +V CDNG ++ +NP
Sbjct: 118 TTAIGCARVDCDNGGVFITCNYNP 141
>07_01_0186 + 1318168-1318647
Length = 159
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 137 TAAIHCIQVPCDNGVLYGYPVHNP 208
T AI C +V CDNG ++ +NP
Sbjct: 118 TTAIGCARVDCDNGGVFITCNYNP 141
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +2
Query: 53 SDNLALLQQVNCQFPGASSSLVAIRVQLTAAIHCIQVPCDNGVLYGYPVHNPCY 214
S N + C++ +S I V+L + +H I + DN L P+ C+
Sbjct: 416 SQNATIGNSQKCRYLSLASCNENIEVKLFSKVHAIYISGDNFAL-NKPIKKRCH 468
>10_08_0143 + 15174605-15174725,15175252-15175682
Length = 183
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 95 PGASSSLVAIRVQLTAAIHCIQVP 166
PGA+ AI+VQL + +QVP
Sbjct: 83 PGAADDASAIKVQLDKGVLYVQVP 106
>04_01_0046 +
510721-510790,511048-511121,511459-511729,511865-512243,
512550-512771,513130-513259,514311-514367,514756-515046
Length = 497
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 22 CLITSSPRVILRQFSTFTTSQLPIPRRVIQFSRDSRTTHR 141
CL+ R I ++F TT +P+ RVI +R T ++
Sbjct: 433 CLVEEQWRSINQEFLRNTTVPVPLLTRVINLARLMETLYK 472
>03_04_0188 - 18241815-18242477
Length = 220
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 150 CIAAVSCTRIATKLDDAPGNWQLTCC 73
C+AA++CTR L G Q+ C
Sbjct: 32 CLAALACTRAGKALVGVGGQQQVQAC 57
>01_05_0720 -
24588623-24588658,24588888-24589196,24589449-24591366,
24591412-24591693,24592027-24592328
Length = 948
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 95 PGASSSLVAIRVQLTAAIHCIQVPCDNGVLYGYP 196
PG+ +VAI ++LT + + C +LYG P
Sbjct: 208 PGSGRRVVAIVLRLTPLAAILALGCSLVLLYGAP 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,862,742
Number of Sequences: 37544
Number of extensions: 170551
Number of successful extensions: 359
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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