Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303G03f
(312 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018) 28 1.8
SB_33463| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 1.8
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30) 27 2.3
SB_42375| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2) 27 4.1
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16) 26 5.4
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 26 7.2
SB_28591| Best HMM Match : PAN (HMM E-Value=0.0019) 26 7.2
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_38693| Best HMM Match : DIE2_ALG10 (HMM E-Value=0.18) 25 9.5
>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
Length = 3561
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 110 SLVAIRVQLTAAIHCIQVP-CDNGVLY 187
SL +RVQ TA IHC+ P D G+ +
Sbjct: 2001 SLDTVRVQDTAVIHCVTSPLIDPGIFF 2027
>SB_33463| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 390
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 135 SPRRYTASKYLVTTASYMVILYIIHVIVISPLPPWFMC 248
+PR YT +++ AS ++I+ +++ I+I L WF C
Sbjct: 216 APRTYTVVLFVLLYASPLLIMAVLYGILIFNL--WFRC 251
>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
Length = 1405
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 153 QCIAAVSCTRIATKLDDAPGNWQLTCCKSAKLSENYA---GRGC 31
+ +A +S +R+ +KLD G WQL K ++L + GR C
Sbjct: 343 ESLAKLSKSRVFSKLDTNSGFWQLQLDKESRLLTTFITPYGRFC 386
>SB_42375| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2)
Length = 475
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 185 YGYPVHNPCYSDFAFTTVVYV 247
YG+P++ + D FTT ++V
Sbjct: 58 YGFPIYGDLFGDSVFTTAMHV 78
>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2306
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 74 VKVLNCRRITRGEDVIKHYG 15
+KVLN R +TR E IK YG
Sbjct: 1247 LKVLNTRHLTRKEREIKKYG 1266
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 200 HNPCYSDFAFTTVVYVLXFCQSHHNATXGST 292
H+P Y+ ++ +V CQ+ H T ST
Sbjct: 311 HDPVYNQYSTAGEHFVSLCCQNRHGITCAST 341
>SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)
Length = 824
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = -1
Query: 174 LSQGTWMQCIAAVSC--TRIATKLDDAPGNWQLTCCKSAKLSENYA---GRGC 31
+S+G +C ++ +R+ +KLD G WQL K ++L + GR C
Sbjct: 176 MSRGESTRCFQSMKVWPSRVFSKLDANSGFWQLPLDKESRLLHTFITPYGRFC 228
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 105 DAPGNWQLTCCKSAKLSENYAGRGC 31
D W L CC S ++E GR C
Sbjct: 1256 DTERAWLLRCCVSGSMTEELWGREC 1280
>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 134 LTAAIHCIQVPCDNGVLYGYPVH 202
+T + +Q PC+ GV + +P H
Sbjct: 652 ITITLKALQCPCNEGVCHPHPYH 674
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 48 NSPTI*HFYNKSIANSPARHPV*SRFAYNSPRRYTAS 158
NSP + +NSP R PV R NSPRR S
Sbjct: 282 NSPRRVPVSPRQRSNSPRRVPVSPRQRSNSPRRVPVS 318
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 87 ANSPARHPV*SRFAYNSPRRYTAS 158
+NSP R PV R NSPRR S
Sbjct: 281 SNSPRRVPVSPRQRSNSPRRVPVS 304
>SB_28591| Best HMM Match : PAN (HMM E-Value=0.0019)
Length = 238
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 91 IPRRVIQFSRDSRTTHRGDTLHPSTL*QRRPIWLSCT 201
IP+R +F + T +L+P+T RRP W+ T
Sbjct: 146 IPKRWYRFVGPAGTRLSESSLNPTTCGTRRPGWMKGT 182
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 153 QCIAAVSCTRIATKLDDAPGNWQLTCCKSAKLSENYA---GRGC 31
+ +A +S +R+ +KLD G WQL K + L + GR C
Sbjct: 363 ESLAKLSKSRVFSKLDANSGFWQLPLDKESPLLTTFITPYGRFC 406
>SB_38693| Best HMM Match : DIE2_ALG10 (HMM E-Value=0.18)
Length = 583
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = +2
Query: 50 FSDNLALLQQVNCQFPGASSSLVAIRVQLTAAIHCIQVPCDNGVLYGYPVH 202
F DN LLQQ+ F G I + I + C +G G P H
Sbjct: 300 FKDNPQLLQQIGLAFEGGEIRQYIIIIASDLGYFAIGLVCSDG-FGGNPNH 349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,411,015
Number of Sequences: 59808
Number of extensions: 201210
Number of successful extensions: 517
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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