Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G03f
         (312 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-P...    29   1.2  
AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-P...    29   1.2  

>AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-PB,
            isoform B protein.
          Length = 2968

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 150  CIAAVSCTRIATKLDDAPGNWQLTCCKSAKLSENYAGRGCN*A-LRGNV 7
            C  A SC  + T++    GN + TC            RGC+ A L  NV
Sbjct: 1285 CSDAASCATVGTEITKCEGNNKQTCSTVFNSEGQVVARGCSDAVLAANV 1333


>AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-PA,
            isoform A protein.
          Length = 2931

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 150  CIAAVSCTRIATKLDDAPGNWQLTCCKSAKLSENYAGRGCN*A-LRGNV 7
            C  A SC  + T++    GN + TC            RGC+ A L  NV
Sbjct: 1248 CSDAASCATVGTEITKCEGNNKQTCSTVFNSEGQVVARGCSDAVLAANV 1296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,657,429
Number of Sequences: 53049
Number of extensions: 283961
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 610819518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)