Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G03f
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.28 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.5  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    20   6.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    20   6.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   8.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.28
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 98  GASSSLVAIRVQLTAAIHCIQVPCDNGVLYGYPV-HNPCYSDFAFTTVVYVLXFCQSHHN 274
           G + S+ A  + ++     ++ P D+ +   + +  NP  S+  F      L FC+  HN
Sbjct: 520 GTTKSMEAANI-MSKLPKTVRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHN 578

Query: 275 A 277
           A
Sbjct: 579 A 579


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 164  PCDNGVLYGYPVH-NPCYSDF 223
            P DN  ++GY +H  P + D+
Sbjct: 1390 PTDNAPIHGYTIHYKPEFGDW 1410


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 183 YMVILYIIHVIVISPLPPW 239
           Y + L  +H I ++  P W
Sbjct: 11  YSLALLCLHAIFVNAAPDW 29


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 183 YMVILYIIHVIVISPLPPW 239
           Y + L  +H I ++  P W
Sbjct: 11  YSLALLCLHAIFVNAAPDW 29


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 50  FSDNLALLQQVNCQFPGASSS 112
           F+D+ A +   +  +PG  SS
Sbjct: 69  FNDSAAAITSTSPSYPGGGSS 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,511
Number of Sequences: 438
Number of extensions: 2090
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)