Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303G03f
         (312 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09340.1 68416.m01108 amino acid transporter family protein l...    29   0.87 
At3g09330.1 68416.m01107 amino acid transporter family protein b...    29   0.87 
At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00...    27   3.5  
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro...    25   8.1  
At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protei...    25   8.1  

>At3g09340.1 68416.m01108 amino acid transporter family protein low
           similarity to vesicular GABA transporter [Rattus
           norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 528

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 117 SRFAYNSPRRYTASKYLVTTASYMVILYIIHVIVISPL 230
           S+F  N P++YTASK  V TA  +V+    + + ++P+
Sbjct: 381 SQFTLNMPQQYTASKIAVWTA--VVVPMTKYALALTPI 416


>At3g09330.1 68416.m01107 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 524

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 117 SRFAYNSPRRYTASKYLVTTASYMVILYIIHVIVISPL 230
           S+F  N P++YTASK  V TA  +V+    + + ++P+
Sbjct: 381 SQFTLNMPQQYTASKIAVWTA--VVVPMTKYALALTPI 416


>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 338

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 60  LSENYAGRGCN*ALRGNVY 4
           ++ NY GR C  +L+GN+Y
Sbjct: 192 VNHNYLGRCCRVSLKGNIY 210


>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
           protein similar to oligopeptide transporter Opt1p
           [Candida albicans] GI:2367386; contains Pfam profile
           PF03169: OPT oligopeptide transporter protein
          Length = 766

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 176 GVLY-GYPVHNPCYSDFAFTTVVYVLXFCQ 262
           G +Y GYPV N C+  + + ++   + F Q
Sbjct: 516 GYIYPGYPVANMCFKVYGYISMQQAITFLQ 545


>At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protein
           similar to pathogenesis related protein-1 GB:AAC25629
           GI:3290004 from [Zea mays]; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 241

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 146 IHCIQVPCDNGVLYGYPVHNP 208
           + C  V C NG +Y   V+NP
Sbjct: 189 VGCASVDCSNGGVYAICVYNP 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,996,522
Number of Sequences: 28952
Number of extensions: 131793
Number of successful extensions: 233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)